MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:428.9 nTPM
HPA Brain:864.4 nTPM
GTEx:428.9 nTPM
FANTOM5:1428.1 Scaled Tags Per Million
Pig:3153.9 nTPM
Mouse:288.4 nTPM
Allen mouse:8.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 864.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 751.6
1830 Male, age 51, unknown 1086.8
1833 Male, age 53, unknown 951.7
2411 Female, age 72, unknown 877.7
2019 Male, age 18, unknown 784.5
1870 Female, age 42, unknown 750.8
2219 Male, age 76, both hemispheres 683.7
2828 Female, age 72, unknown 667.7
2586 Male, age 75, left hemisphere 638.0
2666 Male, age 74, left hemisphere 568.5
1827 Male, age 72, unknown 506.8
Dorsal raphe nucleus
nTPM: 519.6
2750 Male, age 76, both hemispheres 1122.4
2016 Female, age 72, unknown 524.6
1828 Male, age 53, unknown 463.3
2047 Male, age 72, unknown 275.3
2298 Female, age 72, unknown 212.1
Inferior colliculus
nTPM: 404.0
2849 Male, age 72, unknown 457.3
1848 Female, age 42, unknown 441.1
1890 Male, age 53, unknown 439.6
2097 Female, age 72, unknown 278.0
Median raphe nucleus
nTPM: 538.6
2220 Male, age 76, midline 538.6
Periaquaductal grey, anterior
nTPM: 357.7
2502 Female, age 75, unknown 432.7
1947 Male, age 18, unknown 362.9
1795 Male, age 51, unknown 277.6
Periaquaductal grey, dorsal
nTPM: 288.8
2464 Female, age 72, unknown 493.6
1831 Male, age 72, unknown 361.1
2850 Male, age 76, both hemispheres 161.2
1840 Male, age 53, unknown 139.4
Periaquaductal grey, lateral
nTPM: 310.8
2053 Male, age 18, unknown 391.7
2272 Male, age 74, both hemispheres 366.0
2140 Male, age 76, both hemispheres 174.6
Pretectal area
nTPM: 388.8
2316 Male, age 76, right hemisphere 623.2
2407 Male, age 75, both hemispheres 564.3
1815 Male, age 53, unknown 553.9
2825 Male, age 18, unknown 444.1
1817 Female, age 42, unknown 402.7
2007 Male, age 72, unknown 387.3
2224 Female, age 72, unknown 315.0
2273 Male, age 74, both hemispheres 289.0
2667 Female, age 75, unknown 248.0
1944 Female, age 72, unknown 244.1
1816 Male, age 51, unknown 204.9
Red nucleus
nTPM: 864.4
1865 Male, age 51, unknown 1068.5
2503 Female, age 72, unknown 971.1
2227 Male, age 72, unknown 949.1
1904 Male, age 53, unknown 929.3
2588 Male, age 74, left hemisphere 927.5
2769 Male, age 72, unknown 884.4
2785 Male, age 18, unknown 878.2
1821 Female, age 72, unknown 876.7
2823 Male, age 76, right hemisphere 865.0
1954 Female, age 42, unknown 731.2
2725 Female, age 75, unknown 647.6
2584 Male, age 75, left hemisphere 644.0
Substantia nigra
nTPM: 498.9
2590 Female, age 75, unknown 647.8
2583 Male, age 75, right hemisphere 626.9
1851 Male, age 51, unknown 564.7
2699 Male, age 18, unknown 540.6
1889 Female, age 72, unknown 518.2
2665 Male, age 74, both hemispheres 506.8
2409 Female, age 72, unknown 460.9
1941 Male, age 53, unknown 456.2
1916 Female, age 42, unknown 335.5
2241 Male, age 72, unknown 331.8
Superior colliculus
nTPM: 569.2
1913 Female, age 42, unknown 957.4
1995 Male, age 72, unknown 881.5
1839 Male, age 51, unknown 629.4
2668 Female, age 75, unknown 626.6
2587 Male, age 74, left hemisphere 619.8
1895 Male, age 76, right hemisphere 572.7
1796 Male, age 53, unknown 449.7
2664 Male, age 75, both hemispheres 384.1
2087 Female, age 72, unknown 313.5
2261 Male, age 18, unknown 257.4
Ventral tegmental area
nTPM: 667.7
2223 Female, age 72, unknown 1245.3
2410 Female, age 72, unknown 653.2
2218 Male, age 76, both hemispheres 577.9
2021 Male, age 53, unknown 562.1
1942 Male, age 51, unknown 551.6
1915 Female, age 42, unknown 416.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 428.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 428.9
Samples: 139

Max nTPM: 1861.7
Min nTPM: 74.2
Std nTPM: 274.2
Median nTPM: 349.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 1861.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 1433.5
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 1175.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1090.6
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 1061.0
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 1030.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 1020.8
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 955.3
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 851.7
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 839.1
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 816.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 1428.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1428.1
FF:10158-103A5 76 years, female 1428.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 3153.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 2896.2
Samples: 4

Max nTPM: 5960.7
Min nTPM: 1609.6
Sample A Female 2103.7
Sample B Female 1609.6
Sample C Male 1910.8
Sample D Male 5960.7
Midbrain
nTPM: 3154.0
Samples: 4

Max nTPM: 7063.4
Min nTPM: 1312.1
Sample A Female 7063.4
Sample B Female 2872.1
Sample C Male 1312.1
Sample D Male 1368.2
Periaqueductal gray
nTPM: 1673.3
Samples: 3

Max nTPM: 2032.7
Min nTPM: 1055.0
Sample B Female 1932.2
Sample C Male 1055.0
Sample D Male 2032.7
Superior colliculi
nTPM: 2266.2
Samples: 4

Max nTPM: 3294.4
Min nTPM: 1241.5
Sample A Female 2073.7
Sample B Female 1241.5
Sample C Male 2455.3
Sample D Male 3294.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 288.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 288.4
Samples: 4

Max nTPM: 345.4
Min nTPM: 216.3
Sample A Male 272.3
Sample B Male 216.3
Sample C Female 345.4
Sample D Female 319.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.6
69201510 Antisense, RP_050317_03_A10, Mouse strain C57BL/6J (56 days, male) 10.1
69174034 Antisense, RP_050329_01_H11, Mouse strain C57BL/6J (56 days, male) 7.2

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