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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
264.7
nTPM
Monaco:
635.2
nTPM
Schmiedel:
12.7
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
264.7
HPA sample
nTPM
gdT-cell nTPM: 264.7
Samples: 6
Max nTPM: 342.9
Min nTPM: 164.6
P10809_1007
313.0
P10809_1022
342.9
P10809_1041
288.0
P10809_1060
164.6
P10809_1077
263.5
P10809_1098
216.3
MAIT T-cell nTPM: 3.4
Samples: 6
Max nTPM: 7.3
Min nTPM: 0.3
P10809_1006
1.8
P10809_1024
4.6
P10809_1043
0.3
P10809_1062
4.4
P10809_1083
1.8
P10809_1097
7.3
Memory CD4 T-cell nTPM: 56.1
Samples: 6
Max nTPM: 154.0
Min nTPM: 1.8
P10809_1014
5.1
P10809_1026
2.3
P10809_1045
29.1
P10809_1064
144.4
P10809_1086
154.0
P10809_1113
1.8
Memory CD8 T-cell nTPM: 145.2
Samples: 5
Max nTPM: 207.5
Min nTPM: 90.7
P10809_1012
99.4
P10809_1027
170.8
P10809_1046
157.7
P10809_1065
207.5
P10809_1111
90.7
Naive CD4 T-cell nTPM: 19.1
Samples: 6
Max nTPM: 95.3
Min nTPM: 0.3
P10809_1015
4.4
P10809_1030
0.3
P10809_1049
2.2
P10809_1068
11.1
P10809_1085
95.3
P10809_1112
1.2
Naive CD8 T-cell nTPM: 122.8
Samples: 6
Max nTPM: 277.4
Min nTPM: 23.2
P10809_1016
23.2
P10809_1031
80.5
P10809_1050
130.5
P10809_1069
176.9
P10809_1087
277.4
P10809_1110
48.1
T-reg nTPM: 1.5
Samples: 6
Max nTPM: 4.9
Min nTPM: 0.0
P10809_1018
0.4
P10809_1037
1.9
P10809_1056
0.0
P10809_1075
0.7
P10809_1094
4.9
P10809_1106
1.3
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
635.2
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 9.4
Samples: 4
Max nTPM: 17.0
Min nTPM: 3.5
RHH5202_R3573
6.6
RHH5230_R3602
3.5
RHH5259_R3631
10.6
RHH5288_R3660
17.0
Effector memory CD8 T-cell nTPM: 433.5
Samples: 4
Max nTPM: 533.2
Min nTPM: 315.4
RHH5203_R3574
315.4
RHH5231_R3603
533.2
RHH5260_R3632
413.5
RHH5289_R3661
472.0
MAIT T-cell nTPM: 2.2
Samples: 4
Max nTPM: 3.6
Min nTPM: 0.1
RHH5233_R3605
2.8
RHH5205_R3576
3.6
RHH5262_R3634
0.1
RHH5297_R3663
2.1
Memory CD4 T-cell TFH nTPM: 5.1
Samples: 4
Max nTPM: 14.0
Min nTPM: 1.7
RHH5300_R3666
3.1
RHH5236_R3608
1.7
RHH5265_R3637
1.7
RHH5208_R3579
14.0
Memory CD4 T-cell Th1 nTPM: 27.2
Samples: 4
Max nTPM: 32.7
Min nTPM: 15.1
RHH5210_R3581
32.7
RHH5302_R3668
15.1
RHH5238_R3610
30.7
RHH5267_R3639
30.3
Memory CD4 T-cell Th1/Th17 nTPM: 11.4
Samples: 4
Max nTPM: 15.0
Min nTPM: 5.9
RHH5303_R3669
11.6
RHH5211_R3582
15.0
RHH5239_R3611
13.1
RHH5268_R3640
5.9
Memory CD4 T-cell Th17 nTPM: 9.5
Samples: 4
Max nTPM: 12.3
Min nTPM: 4.9
RHH5304_R3670
12.3
RHH5212_R3583
10.6
RHH5240_R3612
4.9
RHH5269_R3641
10.2
Memory CD4 T-cell Th2 nTPM: 7.4
Samples: 4
Max nTPM: 8.1
Min nTPM: 6.3
RHH5305_R3671
6.3
RHH5213_R3584
7.7
RHH5241_R3613
7.4
RHH5270_R3642
8.1
Naive CD4 T-cell nTPM: 15.8
Samples: 4
Max nTPM: 26.7
Min nTPM: 10.5
RHH5306_R3672
14.2
RHH5214_R3585
11.8
RHH5242_R3614
26.7
RHH5271_R3643
10.5
Naive CD8 T-cell nTPM: 1.8
Samples: 4
Max nTPM: 2.3
Min nTPM: 0.7
RHH5201_R3572
1.9
RHH5229_R3601
2.3
RHH5258_R3630
0.7
RHH5287_R3659
2.2
Non-Vd2 gdTCR nTPM: 599.5
Samples: 4
Max nTPM: 804.8
Min nTPM: 489.3
RHH5235_R3607
497.6
RHH5264_R3636
489.3
RHH5207_R3578
804.8
RHH5299_R3665
606.3
T-reg nTPM: 10.3
Samples: 4
Max nTPM: 15.8
Min nTPM: 6.6
RHH5301_R3667
6.6
RHH5237_R3609
7.4
RHH5266_R3638
11.2
RHH5209_R3580
15.8
Terminal effector memory CD4 T-cell nTPM: 623.7
Samples: 2
Max nTPM: 713.6
Min nTPM: 533.8
RHH5243_R3615
713.6
RHH5272_R3644
533.8
Terminal effector memory CD8 T-cell nTPM: 635.2
Samples: 4
Max nTPM: 716.0
Min nTPM: 543.4
RHH5232_R3604
716.0
RHH5204_R3575
543.4
RHH5261_R3633
599.1
RHH5296_R3662
682.3
Vd2 gdTCR nTPM: 254.4
Samples: 4
Max nTPM: 569.1
Min nTPM: 101.6
RHH5234_R3606
101.6
RHH5206_R3577
569.1
RHH5263_R3635
198.2
RHH5298_R3664
148.7
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
