HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:17.2 nTPM
HPA Brain:36.8 nTPM
GTEx:17.2 nTPM
FANTOM5:28.4 Scaled Tags Per Million
Pig:3.7 nTPM
Mouse:5.5 nTPM
Allen mouse:0.0 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA042685
Glial cells Not detected
Neuronal cells Not detected


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 36.8
Sample id Sample description nTPM
Hippocampus
nTPM: 34.4
2148 Female, age 91, left hemisphere 39.0
2621 Female, age 67, right hemisphere 37.6
1911 Female, age 85, right hemisphere 37.0
1855 Male, age 76, left hemisphere 33.3
1898 Male, age 80, left hemisphere 30.4
2529 Female, age 94, left hemisphere 29.2
Dentate gyrus
nTPM: 36.8
2531 Female, age 67, both hemispheres 40.8
1927 Female, age 91, both hemispheres 37.2
2010 Male, age 76, both hemispheres 37.2
2246 Female, age 85, both hemispheres 36.9
2530 Female, age 94, left hemisphere 35.6
2528 Male, age 74, both hemispheres 33.1
Entorhinal gyrus
nTPM: 34.5
2613 Female, age 94, left hemisphere 38.8
2686 Male, age 75, right hemisphere 38.6
1787 Male, age 76, left hemisphere 35.2
2764 Male, age 80, right hemisphere 34.6
1938 Female, age 85, left hemisphere 30.1
2117 Female, age 91, right hemisphere 29.4
Hippocampus, CA1
nTPM: 35.7
1873 Female, age 85, both hemispheres 37.9
2045 Male, age 76, both hemispheres 36.9
2749 Male, age 80, left hemisphere 36.0
2082 Female, age 91, right hemisphere 35.2
2527 Male, age 74, both hemispheres 32.7
Hippocampus, CA2
nTPM: 32.7
1892 Male, age 76, both hemispheres 35.9
2113 Female, age 91, right hemisphere 35.3
1963 Male, age 80, left hemisphere 34.5
2437 Female, age 94, left hemisphere 30.7
1940 Female, age 85, left hemisphere 30.1
2249 Male, age 74, both hemispheres 29.7
Hippocampus, CA3
nTPM: 36.8
2861 Female, age 67, both hemispheres 45.5
2620 Female, age 94, left hemisphere 41.4
2137 Male, age 80, left hemisphere 39.5
1891 Female, age 85, both hemispheres 32.4
1867 Male, age 76, both hemispheres 31.3
2436 Male, age 74, both hemispheres 30.6
Parahippocampal cortex
nTPM: 35.1
2622 Female, age 67, right hemisphere 39.3
2018 Male, age 76, both hemispheres 37.8
2532 Female, age 72, left hemisphere 36.7
2692 Male, age 74, both hemispheres 35.5
2693 Female, age 94, both hemispheres 34.8
1933 Female, age 85, both hemispheres 34.1
2250 Female, age 67, right hemisphere 33.9
1990 Female, age 91, right hemisphere 33.6
2245 Female, age 91, both hemispheres 32.9
1850 Male, age 80, both hemispheres 32.3
Perirhinal gyrus
nTPM: 33.3
1841 Female, age 85, right hemisphere 34.3
1794 Male, age 80, right hemisphere 33.9
2848 Male, age 76, right hemisphere 33.8
2521 Female, age 94, right hemisphere 33.0
1847 Female, age 91, left hemisphere 31.3
Subiculum
nTPM: 32.7
2729 Female, age 91, right hemisphere 34.7
2042 Male, age 76, both hemispheres 34.6
2619 Male, age 74, both hemispheres 33.8
1901 Male, age 80, both hemispheres 33.6
1977 Female, age 85, both hemispheres 32.7
2438 Female, age 94, left hemisphere 26.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 17.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 17.2
Samples: 197

Max nTPM: 29.5
Min nTPM: 7.4
Std nTPM: 3.3
Median nTPM: 16.9
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 29.5
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 26.1
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 25.6
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 25.0
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 24.2
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 24.0
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 23.7
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 23.5
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 23.3
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 23.2
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 23.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 28.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 28.4
FF:10153-102I9 76 years, female 30.9
FF:10169-103B7 60 years, female 25.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 3.7
Pig sample Sample description nTPM
Subiculum
nTPM: 3.7
Samples: 4

Max nTPM: 4.4
Min nTPM: 3.1
Sample A Female 4.4
Sample B Female 3.8
Sample C Male 3.1
Sample D Male 3.3
Dorsal hippocampus
nTPM: 3.4
Samples: 4

Max nTPM: 3.8
Min nTPM: 3.0
Sample A Female 3.8
Sample B Female 3.5
Sample C Male 3.2
Sample D Male 3.0
Entorhinal cortex
nTPM: 3.7
Samples: 4

Max nTPM: 4.2
Min nTPM: 3.1
Sample A Female 3.6
Sample B Female 3.9
Sample C Male 4.2
Sample D Male 3.1
Ventral hippocampus
nTPM: 3.6
Samples: 4

Max nTPM: 4.1
Min nTPM: 3.1
Sample A Female 3.9
Sample B Female 3.1
Sample C Male 4.1
Sample D Male 3.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 5.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 5.4
Samples: 4

Max nTPM: 6.0
Min nTPM: 4.9
Sample A Male 5.6
Sample B Male 6.0
Sample C Female 5.2
Sample D Female 4.9
Hippocampal formation
nTPM: 5.5
Samples: 4

Max nTPM: 6.8
Min nTPM: 4.6
Sample A Male 6.8
Sample B Male 5.7
Sample C Female 4.6
Sample D Female 4.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.0
68844409 Antisense, RP_050222_01_E10, Mouse strain C57BL/6J (56 days, male) 0.0

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