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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
17.4
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 17.4
Samples: 152
Max nTPM: 51.4
Min nTPM: 0.3
Std nTPM: 9.7
Median nTPM: 15.6
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
51.4
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
48.2
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
46.3
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
43.0
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
40.5
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
39.4
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
38.8
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
37.8
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
35.1
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
35.1
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
34.0
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
33.8
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
32.5
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
31.2
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
30.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
30.1
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
29.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
29.4
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
29.0
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
28.6
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
27.9
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
27.5
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
27.2
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
26.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
26.7
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
26.7
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
26.6
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
26.5
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
26.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
25.6
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
24.7
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
23.3
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
23.0
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
23.0
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
22.9
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
22.8
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
22.8
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
22.8
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
22.7
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
22.1
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
21.7
GTEX-P44G-0011-R4A-SM-2I3FB
30-39 years, male
21.4
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
21.4
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
21.2
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
20.7
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
20.4
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
20.4
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
20.3
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
20.1
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
19.9
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
19.8
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
19.5
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
19.4
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
19.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
19.0
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
18.6
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
18.6
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
18.5
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
18.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
18.2
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
17.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
17.9
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
17.9
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
17.8
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
17.6
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
17.5
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
17.4
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
17.1
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
17.0
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
17.0
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
16.7
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
16.6
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
16.5
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
16.1
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
16.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
15.7
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
15.5
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
15.0
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
14.9
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
14.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
14.5
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
14.2
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
14.2
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
14.2
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
14.1
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
14.0
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
14.0
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
13.8
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
13.8
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
13.7
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
13.6
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
13.5
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
13.2
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
13.0
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
12.9
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
12.9
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
12.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
12.6
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
12.5
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
12.4
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
12.3
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
12.3
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
12.3
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
12.2
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
12.1
GTEX-Y8DK-0011-R4A-SM-EXUR1
60-69 years, male
11.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
11.8
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
11.4
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
11.4
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
11.1
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
11.0
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
10.9
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
10.8
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
10.8
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
10.8
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
10.7
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
10.6
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
10.4
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
10.3
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
10.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
10.0
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
9.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS
60-69 years, male
9.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
9.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
9.3
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
9.1
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
9.0
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
8.8
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
8.6
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
8.2
GTEX-1JJEA-0011-R4a-SM-EXUTC
60-69 years, male
8.1
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
7.9
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
7.8
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
7.8
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
7.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
7.5
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
7.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
6.4
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
6.3
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
6.2
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
5.7
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
5.1
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
5.1
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
4.9
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
4.3
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
3.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
3.7
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
2.7
GTEX-1H2FU-0011-R4a-SM-CL551
60-69 years, female
1.4
GTEX-X4EP-0011-R4B-SM-3P627
60-69 years, female
1.0
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
0.6
GTEX-1CB4J-0011-R4b-SM-9WG5P
60-69 years, male
0.3
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
71.9
Mouse sample
Sample description
nTPM
Amygdala nTPM: 71.8
Samples: 4
Max nTPM: 75.6
Min nTPM: 69.1
Sample A
Male
75.6
Sample B
Male
69.1
Sample C
Female
70.1
Sample D
Female
72.5
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
The Human Protein Atlas project is funded
