MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.3 nTPM
HPA Brain:11.2 nTPM
GTEx:9.3 nTPM
FANTOM5:18.7 Scaled Tags Per Million
Pig:6.3 nTPM
Mouse:7.6 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 11.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 10.6
1870 Female, age 42, unknown 13.2
1830 Male, age 51, unknown 11.0
2411 Female, age 72, unknown 10.8
2586 Male, age 75, left hemisphere 10.7
1833 Male, age 53, unknown 10.6
2019 Male, age 18, unknown 10.6
2828 Female, age 72, unknown 10.4
1827 Male, age 72, unknown 9.8
2219 Male, age 76, both hemispheres 9.7
2666 Male, age 74, left hemisphere 8.9
Dorsal raphe nucleus
nTPM: 10.2
2016 Female, age 72, unknown 11.9
2750 Male, age 76, both hemispheres 10.1
1828 Male, age 53, unknown 10.0
2047 Male, age 72, unknown 9.6
2298 Female, age 72, unknown 9.6
Inferior colliculus
nTPM: 10.8
2097 Female, age 72, unknown 11.6
1848 Female, age 42, unknown 11.2
1890 Male, age 53, unknown 10.4
2849 Male, age 72, unknown 10.1
Median raphe nucleus
nTPM: 10.2
2220 Male, age 76, midline 10.2
Periaquaductal grey, anterior
nTPM: 10.4
2502 Female, age 75, unknown 11.9
1947 Male, age 18, unknown 10.7
1795 Male, age 51, unknown 8.6
Periaquaductal grey, dorsal
nTPM: 11.2
1840 Male, age 53, unknown 11.6
2850 Male, age 76, both hemispheres 11.1
1831 Male, age 72, unknown 11.0
2464 Female, age 72, unknown 11.0
Periaquaductal grey, lateral
nTPM: 10.4
2140 Male, age 76, both hemispheres 11.4
2053 Male, age 18, unknown 10.4
2272 Male, age 74, both hemispheres 9.6
Pretectal area
nTPM: 9.8
2224 Female, age 72, unknown 11.7
2825 Male, age 18, unknown 11.1
2316 Male, age 76, right hemisphere 10.6
2667 Female, age 75, unknown 10.2
2007 Male, age 72, unknown 10.0
1815 Male, age 53, unknown 9.8
2273 Male, age 74, both hemispheres 9.7
1817 Female, age 42, unknown 9.1
1944 Female, age 72, unknown 9.0
1816 Male, age 51, unknown 8.5
2407 Male, age 75, both hemispheres 7.8
Red nucleus
nTPM: 10.7
1954 Female, age 42, unknown 13.0
1821 Female, age 72, unknown 12.1
1904 Male, age 53, unknown 12.1
1865 Male, age 51, unknown 11.7
2227 Male, age 72, unknown 11.6
2769 Male, age 72, unknown 11.0
2503 Female, age 72, unknown 10.8
2823 Male, age 76, right hemisphere 10.5
2785 Male, age 18, unknown 9.4
2584 Male, age 75, left hemisphere 9.3
2725 Female, age 75, unknown 8.7
2588 Male, age 74, left hemisphere 8.1
Substantia nigra
nTPM: 10.3
2409 Female, age 72, unknown 13.5
2241 Male, age 72, unknown 11.2
2583 Male, age 75, right hemisphere 10.7
2665 Male, age 74, both hemispheres 10.7
2699 Male, age 18, unknown 10.1
1851 Male, age 51, unknown 9.8
2590 Female, age 75, unknown 9.8
1916 Female, age 42, unknown 9.3
1941 Male, age 53, unknown 9.2
1889 Female, age 72, unknown 9.0
Superior colliculus
nTPM: 10.0
1839 Male, age 51, unknown 11.6
1913 Female, age 42, unknown 11.1
2668 Female, age 75, unknown 10.6
1895 Male, age 76, right hemisphere 10.5
2664 Male, age 75, both hemispheres 10.2
1796 Male, age 53, unknown 9.8
1995 Male, age 72, unknown 9.7
2261 Male, age 18, unknown 9.7
2587 Male, age 74, left hemisphere 9.3
2087 Female, age 72, unknown 8.0
Ventral tegmental area
nTPM: 9.8
2223 Female, age 72, unknown 10.8
1942 Male, age 51, unknown 10.4
2021 Male, age 53, unknown 9.9
1915 Female, age 42, unknown 9.6
2410 Female, age 72, unknown 9.3
2218 Male, age 76, both hemispheres 8.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 9.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.3
Samples: 139

Max nTPM: 19.5
Min nTPM: 5.6
Std nTPM: 2.0
Median nTPM: 9.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 19.5
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 14.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 13.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 13.6
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 13.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 13.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 13.1
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 13.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 12.9
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 12.7
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 12.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 18.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 18.7
FF:10158-103A5 76 years, female 18.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 6.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 5.7
Samples: 4

Max nTPM: 7.2
Min nTPM: 4.7
Sample A Female 7.2
Sample B Female 6.0
Sample C Male 4.9
Sample D Male 4.7
Midbrain
nTPM: 6.2
Samples: 4

Max nTPM: 7.9
Min nTPM: 5.1
Sample A Female 7.9
Sample B Female 6.5
Sample C Male 5.1
Sample D Male 5.4
Periaqueductal gray
nTPM: 6.0
Samples: 3

Max nTPM: 6.2
Min nTPM: 5.7
Sample B Female 6.2
Sample C Male 5.7
Sample D Male 6.1
Superior colliculi
nTPM: 6.4
Samples: 4

Max nTPM: 7.3
Min nTPM: 5.5
Sample A Female 7.0
Sample B Female 7.3
Sample C Male 5.5
Sample D Male 5.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 7.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 7.6
Samples: 4

Max nTPM: 7.9
Min nTPM: 7.0
Sample A Male 7.9
Sample B Male 7.7
Sample C Female 7.0
Sample D Female 7.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
70303887 Antisense, RP_050609_02_G03, Mouse strain C57BL/6J (56 days, male) 0.0

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