MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:38.0 nTPM
HPA Brain:105.6 nTPM
GTEx:38.0 nTPM
FANTOM5:153.3 Scaled Tags Per Million
Pig:50.0 nTPM
Mouse:39.7 nTPM
Allen mouse:3.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 105.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 81.8
1870 Female, age 42, unknown 93.6
2019 Male, age 18, unknown 93.4
2586 Male, age 75, left hemisphere 90.4
2828 Female, age 72, unknown 88.2
1833 Male, age 53, unknown 84.8
2411 Female, age 72, unknown 79.6
1827 Male, age 72, unknown 79.1
2666 Male, age 74, left hemisphere 75.4
1830 Male, age 51, unknown 73.4
2219 Male, age 76, both hemispheres 59.8
Dorsal raphe nucleus
nTPM: 81.6
2016 Female, age 72, unknown 95.1
1828 Male, age 53, unknown 87.0
2298 Female, age 72, unknown 84.7
2047 Male, age 72, unknown 73.7
2750 Male, age 76, both hemispheres 67.4
Inferior colliculus
nTPM: 86.0
2849 Male, age 72, unknown 90.9
1848 Female, age 42, unknown 86.9
2097 Female, age 72, unknown 84.7
1890 Male, age 53, unknown 81.5
Median raphe nucleus
nTPM: 51.3
2220 Male, age 76, midline 51.3
Periaquaductal grey, anterior
nTPM: 105.6
2502 Female, age 75, unknown 124.8
1795 Male, age 51, unknown 101.3
1947 Male, age 18, unknown 90.7
Periaquaductal grey, dorsal
nTPM: 94.6
2850 Male, age 76, both hemispheres 113.1
1840 Male, age 53, unknown 96.2
1831 Male, age 72, unknown 88.0
2464 Female, age 72, unknown 81.3
Periaquaductal grey, lateral
nTPM: 95.2
2053 Male, age 18, unknown 96.0
2272 Male, age 74, both hemispheres 95.0
2140 Male, age 76, both hemispheres 94.6
Pretectal area
nTPM: 96.8
2667 Female, age 75, unknown 155.3
1816 Male, age 51, unknown 103.1
1944 Female, age 72, unknown 102.2
2273 Male, age 74, both hemispheres 101.6
1817 Female, age 42, unknown 93.9
2007 Male, age 72, unknown 88.8
1815 Male, age 53, unknown 87.1
2224 Female, age 72, unknown 87.0
2316 Male, age 76, right hemisphere 85.4
2407 Male, age 75, both hemispheres 85.0
2825 Male, age 18, unknown 75.3
Red nucleus
nTPM: 81.9
2785 Male, age 18, unknown 102.9
1904 Male, age 53, unknown 98.5
1954 Female, age 42, unknown 94.0
1821 Female, age 72, unknown 89.2
2769 Male, age 72, unknown 86.3
2227 Male, age 72, unknown 85.8
1865 Male, age 51, unknown 83.5
2588 Male, age 74, left hemisphere 76.8
2503 Female, age 72, unknown 75.0
2823 Male, age 76, right hemisphere 71.3
2584 Male, age 75, left hemisphere 63.5
2725 Female, age 75, unknown 55.6
Substantia nigra
nTPM: 74.2
2409 Female, age 72, unknown 90.2
1889 Female, age 72, unknown 82.8
2241 Male, age 72, unknown 80.7
2583 Male, age 75, right hemisphere 77.3
1916 Female, age 42, unknown 75.9
1851 Male, age 51, unknown 75.6
2699 Male, age 18, unknown 70.2
2665 Male, age 74, both hemispheres 64.3
1941 Male, age 53, unknown 62.7
2590 Female, age 75, unknown 62.1
Superior colliculus
nTPM: 88.4
2664 Male, age 75, both hemispheres 121.2
2261 Male, age 18, unknown 90.6
2087 Female, age 72, unknown 89.6
1913 Female, age 42, unknown 87.4
1839 Male, age 51, unknown 86.6
1995 Male, age 72, unknown 85.9
2587 Male, age 74, left hemisphere 85.6
1796 Male, age 53, unknown 80.7
1895 Male, age 76, right hemisphere 78.8
2668 Female, age 75, unknown 77.3
Ventral tegmental area
nTPM: 75.0
2410 Female, age 72, unknown 87.2
1915 Female, age 42, unknown 78.8
2021 Male, age 53, unknown 78.1
1942 Male, age 51, unknown 74.8
2218 Male, age 76, both hemispheres 66.1
2223 Female, age 72, unknown 64.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 38.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 38.0
Samples: 139

Max nTPM: 82.1
Min nTPM: 17.6
Std nTPM: 10.9
Median nTPM: 36.3
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 82.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 77.3
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 67.5
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 66.9
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 59.8
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 56.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 55.8
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 54.8
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 54.7
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 54.4
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 54.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 153.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 153.3
FF:10158-103A5 76 years, female 153.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 50.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 40.1
Samples: 4

Max nTPM: 43.7
Min nTPM: 35.0
Sample A Female 43.7
Sample B Female 43.1
Sample C Male 38.6
Sample D Male 35.0
Midbrain
nTPM: 38.6
Samples: 4

Max nTPM: 43.4
Min nTPM: 34.5
Sample A Female 43.4
Sample B Female 34.5
Sample C Male 39.7
Sample D Male 36.7
Periaqueductal gray
nTPM: 30.4
Samples: 3

Max nTPM: 33.1
Min nTPM: 26.5
Sample B Female 31.6
Sample C Male 33.1
Sample D Male 26.5
Superior colliculi
nTPM: 50.0
Samples: 4

Max nTPM: 70.6
Min nTPM: 36.6
Sample A Female 55.9
Sample B Female 70.6
Sample C Male 36.9
Sample D Male 36.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 39.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 39.7
Samples: 4

Max nTPM: 40.8
Min nTPM: 38.8
Sample A Male 39.3
Sample B Male 38.8
Sample C Female 40.8
Sample D Female 39.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.0
69262278 Antisense, RP_050303_01_E04, Mouse strain C57BL/6J (56 days, male) 3.0
70231308 Antisense, RP_050303_01_E04, Mouse strain C57BL/6J (56 days, male) 1.1

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