MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:65.1 nTPM
HPA Brain:53.4 nTPM
GTEx:65.1 nTPM
FANTOM5:26.7 Scaled Tags Per Million
Pig:46.2 nTPM
Mouse:28.9 nTPM
Allen mouse:8.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 53.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 38.2
2586 Male, age 75, left hemisphere 58.5
2828 Female, age 72, unknown 44.5
2666 Male, age 74, left hemisphere 43.1
1827 Male, age 72, unknown 41.0
1870 Female, age 42, unknown 36.9
1833 Male, age 53, unknown 33.8
1830 Male, age 51, unknown 32.5
2019 Male, age 18, unknown 32.5
2219 Male, age 76, both hemispheres 31.4
2411 Female, age 72, unknown 28.2
Dorsal raphe nucleus
nTPM: 43.7
2016 Female, age 72, unknown 49.5
2298 Female, age 72, unknown 48.5
1828 Male, age 53, unknown 46.2
2047 Male, age 72, unknown 39.9
2750 Male, age 76, both hemispheres 34.3
Inferior colliculus
nTPM: 45.3
2849 Male, age 72, unknown 49.7
1890 Male, age 53, unknown 44.6
1848 Female, age 42, unknown 43.5
2097 Female, age 72, unknown 43.4
Median raphe nucleus
nTPM: 38.6
2220 Male, age 76, midline 38.6
Periaquaductal grey, anterior
nTPM: 46.7
1795 Male, age 51, unknown 52.9
2502 Female, age 75, unknown 51.4
1947 Male, age 18, unknown 35.7
Periaquaductal grey, dorsal
nTPM: 51.3
2850 Male, age 76, both hemispheres 59.9
1840 Male, age 53, unknown 58.0
1831 Male, age 72, unknown 48.2
2464 Female, age 72, unknown 39.3
Periaquaductal grey, lateral
nTPM: 53.4
2272 Male, age 74, both hemispheres 57.3
2140 Male, age 76, both hemispheres 53.0
2053 Male, age 18, unknown 49.9
Pretectal area
nTPM: 44.1
2273 Male, age 74, both hemispheres 56.4
2825 Male, age 18, unknown 49.0
2224 Female, age 72, unknown 46.7
1816 Male, age 51, unknown 46.3
1944 Female, age 72, unknown 45.8
2667 Female, age 75, unknown 44.5
2407 Male, age 75, both hemispheres 41.7
1817 Female, age 42, unknown 41.5
2316 Male, age 76, right hemisphere 39.6
1815 Male, age 53, unknown 36.7
2007 Male, age 72, unknown 36.5
Red nucleus
nTPM: 36.6
2584 Male, age 75, left hemisphere 39.7
1904 Male, age 53, unknown 39.2
1954 Female, age 42, unknown 38.3
2227 Male, age 72, unknown 37.7
2769 Male, age 72, unknown 37.7
2785 Male, age 18, unknown 37.4
2725 Female, age 75, unknown 36.0
1865 Male, age 51, unknown 35.6
2503 Female, age 72, unknown 35.1
1821 Female, age 72, unknown 34.8
2588 Male, age 74, left hemisphere 34.4
2823 Male, age 76, right hemisphere 33.0
Substantia nigra
nTPM: 45.1
2699 Male, age 18, unknown 56.6
2665 Male, age 74, both hemispheres 53.0
1851 Male, age 51, unknown 48.8
1916 Female, age 42, unknown 47.4
2583 Male, age 75, right hemisphere 45.7
2241 Male, age 72, unknown 42.5
2590 Female, age 75, unknown 40.4
1889 Female, age 72, unknown 39.4
2409 Female, age 72, unknown 39.1
1941 Male, age 53, unknown 38.5
Superior colliculus
nTPM: 45.2
2664 Male, age 75, both hemispheres 60.5
1796 Male, age 53, unknown 50.2
1995 Male, age 72, unknown 50.1
2261 Male, age 18, unknown 48.7
2087 Female, age 72, unknown 45.6
2668 Female, age 75, unknown 44.2
2587 Male, age 74, left hemisphere 43.5
1913 Female, age 42, unknown 40.6
1839 Male, age 51, unknown 37.6
1895 Male, age 76, right hemisphere 31.3
Ventral tegmental area
nTPM: 46.0
2223 Female, age 72, unknown 50.0
1915 Female, age 42, unknown 49.0
1942 Male, age 51, unknown 48.2
2021 Male, age 53, unknown 48.1
2218 Male, age 76, both hemispheres 45.4
2410 Female, age 72, unknown 35.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 65.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 65.1
Samples: 139

Max nTPM: 172.5
Min nTPM: 24.2
Std nTPM: 25.7
Median nTPM: 60.1
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 172.5
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 143.0
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 138.3
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 125.9
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 119.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 115.3
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 111.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 110.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 109.6
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 109.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 106.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 26.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 26.7
FF:10158-103A5 76 years, female 26.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 46.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 42.9
Samples: 4

Max nTPM: 47.5
Min nTPM: 38.8
Sample A Female 47.5
Sample B Female 38.8
Sample C Male 44.9
Sample D Male 40.3
Midbrain
nTPM: 40.0
Samples: 4

Max nTPM: 47.1
Min nTPM: 33.9
Sample A Female 47.1
Sample B Female 33.9
Sample C Male 43.1
Sample D Male 35.9
Periaqueductal gray
nTPM: 38.6
Samples: 3

Max nTPM: 43.4
Min nTPM: 31.9
Sample B Female 31.9
Sample C Male 43.4
Sample D Male 40.4
Superior colliculi
nTPM: 46.2
Samples: 4

Max nTPM: 62.3
Min nTPM: 37.1
Sample A Female 45.7
Sample B Female 62.3
Sample C Male 37.1
Sample D Male 39.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 28.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 28.9
Samples: 4

Max nTPM: 35.9
Min nTPM: 23.3
Sample A Male 35.9
Sample B Male 27.8
Sample C Female 23.3
Sample D Female 28.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.4
2483 Antisense, RP_040604_02_A06, Mouse strain C57BL/6J (56 days, male) 8.4
2484 Antisense, RP_040604_02_A06, Mouse strain C57BL/6J (56 days, male) 7.2

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