MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:3.8 nTPM
HPA Brain:16.9 nTPM
GTEx:3.8 nTPM
FANTOM5:27.1 Scaled Tags Per Million
Pig:23.1 nTPM
Mouse:19.5 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 16.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 10.6
2219 Male, age 76, both hemispheres 17.5
1870 Female, age 42, unknown 11.9
2411 Female, age 72, unknown 11.8
1833 Male, age 53, unknown 11.6
1827 Male, age 72, unknown 11.5
1830 Male, age 51, unknown 10.5
2666 Male, age 74, left hemisphere 8.6
2828 Female, age 72, unknown 8.5
2586 Male, age 75, left hemisphere 7.8
2019 Male, age 18, unknown 6.2
Dorsal raphe nucleus
nTPM: 13.9
2047 Male, age 72, unknown 17.1
2298 Female, age 72, unknown 15.7
2016 Female, age 72, unknown 12.7
2750 Male, age 76, both hemispheres 12.7
1828 Male, age 53, unknown 11.3
Inferior colliculus
nTPM: 15.1
2097 Female, age 72, unknown 19.6
2849 Male, age 72, unknown 14.4
1890 Male, age 53, unknown 13.3
1848 Female, age 42, unknown 12.9
Median raphe nucleus
nTPM: 16.9
2220 Male, age 76, midline 16.9
Periaquaductal grey, anterior
nTPM: 15.1
1947 Male, age 18, unknown 17.7
2502 Female, age 75, unknown 17.1
1795 Male, age 51, unknown 10.6
Periaquaductal grey, dorsal
nTPM: 12.6
1840 Male, age 53, unknown 17.5
2464 Female, age 72, unknown 12.3
2850 Male, age 76, both hemispheres 10.6
1831 Male, age 72, unknown 9.9
Periaquaductal grey, lateral
nTPM: 11.8
2272 Male, age 74, both hemispheres 13.9
2053 Male, age 18, unknown 10.9
2140 Male, age 76, both hemispheres 10.6
Pretectal area
nTPM: 10.2
2224 Female, age 72, unknown 13.8
2825 Male, age 18, unknown 12.8
2667 Female, age 75, unknown 12.7
2273 Male, age 74, both hemispheres 12.4
2316 Male, age 76, right hemisphere 10.9
1816 Male, age 51, unknown 9.5
1944 Female, age 72, unknown 8.8
2407 Male, age 75, both hemispheres 8.8
1815 Male, age 53, unknown 8.2
1817 Female, age 42, unknown 7.4
2007 Male, age 72, unknown 7.3
Red nucleus
nTPM: 7.6
2503 Female, age 72, unknown 8.6
1954 Female, age 42, unknown 8.5
1821 Female, age 72, unknown 8.4
2769 Male, age 72, unknown 8.4
2227 Male, age 72, unknown 8.3
2584 Male, age 75, left hemisphere 8.2
1904 Male, age 53, unknown 7.6
1865 Male, age 51, unknown 7.0
2588 Male, age 74, left hemisphere 6.8
2725 Female, age 75, unknown 6.6
2823 Male, age 76, right hemisphere 6.5
2785 Male, age 18, unknown 6.2
Substantia nigra
nTPM: 13.7
2241 Male, age 72, unknown 19.8
1916 Female, age 42, unknown 19.2
2699 Male, age 18, unknown 16.4
2409 Female, age 72, unknown 16.2
1851 Male, age 51, unknown 15.4
1941 Male, age 53, unknown 11.8
2665 Male, age 74, both hemispheres 10.3
2590 Female, age 75, unknown 10.1
1889 Female, age 72, unknown 9.7
2583 Male, age 75, right hemisphere 8.1
Superior colliculus
nTPM: 9.8
1895 Male, age 76, right hemisphere 13.2
1796 Male, age 53, unknown 11.7
1839 Male, age 51, unknown 11.0
2261 Male, age 18, unknown 10.5
2664 Male, age 75, both hemispheres 10.4
2668 Female, age 75, unknown 9.6
2587 Male, age 74, left hemisphere 9.4
2087 Female, age 72, unknown 8.6
1913 Female, age 42, unknown 7.1
1995 Male, age 72, unknown 6.3
Ventral tegmental area
nTPM: 13.6
2218 Male, age 76, both hemispheres 16.8
1915 Female, age 42, unknown 15.8
1942 Male, age 51, unknown 15.1
2410 Female, age 72, unknown 12.6
2021 Male, age 53, unknown 12.3
2223 Female, age 72, unknown 8.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 3.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 3.8
Samples: 139

Max nTPM: 10.6
Min nTPM: 1.1
Std nTPM: 1.7
Median nTPM: 3.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 10.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 9.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 9.1
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 8.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 7.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 7.0
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 6.6
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 6.5
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 6.4
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 6.3
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 6.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 27.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 27.1
FF:10158-103A5 76 years, female 27.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 23.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 16.8
Samples: 4

Max nTPM: 20.6
Min nTPM: 11.5
Sample A Female 19.2
Sample B Female 11.5
Sample C Male 20.6
Sample D Male 15.8
Midbrain
nTPM: 23.1
Samples: 4

Max nTPM: 34.0
Min nTPM: 14.8
Sample A Female 14.8
Sample B Female 18.2
Sample C Male 25.2
Sample D Male 34.0
Periaqueductal gray
nTPM: 22.9
Samples: 3

Max nTPM: 26.4
Min nTPM: 20.0
Sample B Female 20.0
Sample C Male 26.4
Sample D Male 22.2
Superior colliculi
nTPM: 22.3
Samples: 4

Max nTPM: 26.0
Min nTPM: 17.6
Sample A Female 24.5
Sample B Female 17.6
Sample C Male 21.0
Sample D Male 26.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 19.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 19.5
Samples: 4

Max nTPM: 21.6
Min nTPM: 18.4
Sample A Male 18.4
Sample B Male 19.1
Sample C Female 21.6
Sample D Female 18.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
74277639 Antisense, RP_051206_01_D12, Mouse strain C57BL/6J (56 days, male) 0.1

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