MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:18.4 nTPM
HPA Brain:58.3 nTPM
GTEx:18.4 nTPM
FANTOM5:66.5 Scaled Tags Per Million
Pig:62.6 nTPM
Mouse:44.9 nTPM
Allen mouse:3.2 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 58.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 54.8
2586 Male, age 75, left hemisphere 68.0
2019 Male, age 18, unknown 66.6
2411 Female, age 72, unknown 56.5
2219 Male, age 76, both hemispheres 54.0
1827 Male, age 72, unknown 52.0
1830 Male, age 51, unknown 51.3
1833 Male, age 53, unknown 51.2
2828 Female, age 72, unknown 51.2
1870 Female, age 42, unknown 49.1
2666 Male, age 74, left hemisphere 48.3
Dorsal raphe nucleus
nTPM: 41.7
2016 Female, age 72, unknown 43.7
2750 Male, age 76, both hemispheres 42.7
1828 Male, age 53, unknown 42.0
2047 Male, age 72, unknown 41.3
2298 Female, age 72, unknown 38.6
Inferior colliculus
nTPM: 46.8
1890 Male, age 53, unknown 49.4
1848 Female, age 42, unknown 48.8
2097 Female, age 72, unknown 46.5
2849 Male, age 72, unknown 42.4
Median raphe nucleus
nTPM: 32.6
2220 Male, age 76, midline 32.6
Periaquaductal grey, anterior
nTPM: 46.3
2502 Female, age 75, unknown 51.3
1795 Male, age 51, unknown 44.3
1947 Male, age 18, unknown 43.5
Periaquaductal grey, dorsal
nTPM: 39.1
2464 Female, age 72, unknown 43.4
1831 Male, age 72, unknown 39.4
1840 Male, age 53, unknown 38.3
2850 Male, age 76, both hemispheres 35.3
Periaquaductal grey, lateral
nTPM: 42.2
2053 Male, age 18, unknown 48.4
2272 Male, age 74, both hemispheres 41.5
2140 Male, age 76, both hemispheres 36.7
Pretectal area
nTPM: 52.2
2007 Male, age 72, unknown 68.6
1817 Female, age 42, unknown 64.0
1816 Male, age 51, unknown 60.7
2407 Male, age 75, both hemispheres 55.3
1815 Male, age 53, unknown 53.5
1944 Female, age 72, unknown 53.5
2667 Female, age 75, unknown 48.3
2273 Male, age 74, both hemispheres 45.8
2224 Female, age 72, unknown 43.9
2825 Male, age 18, unknown 41.5
2316 Male, age 76, right hemisphere 39.2
Red nucleus
nTPM: 58.3
2785 Male, age 18, unknown 68.6
1865 Male, age 51, unknown 64.3
2588 Male, age 74, left hemisphere 63.9
1821 Female, age 72, unknown 62.9
1954 Female, age 42, unknown 61.5
2503 Female, age 72, unknown 61.4
1904 Male, age 53, unknown 59.9
2769 Male, age 72, unknown 57.1
2227 Male, age 72, unknown 55.4
2823 Male, age 76, right hemisphere 50.2
2584 Male, age 75, left hemisphere 47.8
2725 Female, age 75, unknown 46.7
Substantia nigra
nTPM: 45.0
2583 Male, age 75, right hemisphere 61.5
1889 Female, age 72, unknown 54.8
1941 Male, age 53, unknown 51.3
2590 Female, age 75, unknown 48.7
2409 Female, age 72, unknown 42.0
1851 Male, age 51, unknown 41.5
2665 Male, age 74, both hemispheres 40.0
2241 Male, age 72, unknown 39.9
1916 Female, age 42, unknown 37.5
2699 Male, age 18, unknown 33.1
Superior colliculus
nTPM: 53.6
2668 Female, age 75, unknown 57.9
2664 Male, age 75, both hemispheres 56.8
1913 Female, age 42, unknown 56.3
2261 Male, age 18, unknown 56.3
2587 Male, age 74, left hemisphere 55.0
1895 Male, age 76, right hemisphere 54.9
1995 Male, age 72, unknown 54.1
1839 Male, age 51, unknown 49.6
2087 Female, age 72, unknown 49.5
1796 Male, age 53, unknown 45.7
Ventral tegmental area
nTPM: 42.0
2223 Female, age 72, unknown 54.0
2410 Female, age 72, unknown 49.0
1942 Male, age 51, unknown 40.3
2021 Male, age 53, unknown 39.5
1915 Female, age 42, unknown 38.5
2218 Male, age 76, both hemispheres 30.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 18.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 18.4
Samples: 139

Max nTPM: 36.3
Min nTPM: 1.8
Std nTPM: 5.9
Median nTPM: 17.6
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 36.3
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 34.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 34.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 33.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 31.5
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 31.1
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 30.9
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 30.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 29.3
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 29.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 28.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 66.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 66.5
FF:10158-103A5 76 years, female 66.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 62.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 50.2
Samples: 4

Max nTPM: 63.3
Min nTPM: 38.3
Sample A Female 63.3
Sample B Female 47.1
Sample C Male 38.3
Sample D Male 52.1
Midbrain
nTPM: 62.6
Samples: 4

Max nTPM: 103.2
Min nTPM: 45.4
Sample A Female 103.2
Sample B Female 46.2
Sample C Male 45.4
Sample D Male 55.6
Periaqueductal gray
nTPM: 39.5
Samples: 3

Max nTPM: 44.6
Min nTPM: 36.9
Sample B Female 44.6
Sample C Male 37.0
Sample D Male 36.9
Superior colliculi
nTPM: 57.4
Samples: 4

Max nTPM: 70.8
Min nTPM: 50.5
Sample A Female 70.8
Sample B Female 50.5
Sample C Male 53.3
Sample D Male 55.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 44.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 44.9
Samples: 4

Max nTPM: 50.8
Min nTPM: 36.7
Sample A Male 36.7
Sample B Male 45.0
Sample C Female 50.8
Sample D Female 47.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.2
74657928 Antisense, RP_060220_02_F07, Mouse strain C57BL/6J (56 days, male) 4.2
69549628 Antisense, RP_050301_01_D11, Mouse strain C57BL/6J (56 days, male) 2.2

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