HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:21.8 nTPM
HPA Brain:79.5 nTPM
GTEx:21.8 nTPM
FANTOM5:54.6 Scaled Tags Per Million
Pig:72.7 nTPM
Mouse:66.5 nTPM
Allen mouse:12.5 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 79.5
Sample id Sample description nTPM
Hippocampus
nTPM: 61.6
1898 Male, age 80, left hemisphere 79.2
1855 Male, age 76, left hemisphere 67.3
2621 Female, age 67, right hemisphere 63.4
1911 Female, age 85, right hemisphere 62.8
2529 Female, age 94, left hemisphere 48.4
2148 Female, age 91, left hemisphere 48.1
Dentate gyrus
nTPM: 59.7
2010 Male, age 76, both hemispheres 80.7
1927 Female, age 91, both hemispheres 68.4
2530 Female, age 94, left hemisphere 62.5
2246 Female, age 85, both hemispheres 57.8
2528 Male, age 74, both hemispheres 49.1
2531 Female, age 67, both hemispheres 39.7
Entorhinal gyrus
nTPM: 67.2
2764 Male, age 80, right hemisphere 84.7
1938 Female, age 85, left hemisphere 74.8
1787 Male, age 76, left hemisphere 69.8
2613 Female, age 94, left hemisphere 60.4
2117 Female, age 91, right hemisphere 57.8
2686 Male, age 75, right hemisphere 55.4
Hippocampus, CA1
nTPM: 78.7
2749 Male, age 80, left hemisphere 146.8
1873 Female, age 85, both hemispheres 78.0
2082 Female, age 91, right hemisphere 58.7
2045 Male, age 76, both hemispheres 57.2
2527 Male, age 74, both hemispheres 53.0
Hippocampus, CA2
nTPM: 71.0
1963 Male, age 80, left hemisphere 95.2
1892 Male, age 76, both hemispheres 89.9
1940 Female, age 85, left hemisphere 75.2
2249 Male, age 74, both hemispheres 58.0
2113 Female, age 91, right hemisphere 56.0
2437 Female, age 94, left hemisphere 51.8
Hippocampus, CA3
nTPM: 67.2
2137 Male, age 80, left hemisphere 122.1
1867 Male, age 76, both hemispheres 82.3
1891 Female, age 85, both hemispheres 61.2
2620 Female, age 94, left hemisphere 47.8
2436 Male, age 74, both hemispheres 45.3
2861 Female, age 67, both hemispheres 44.2
Parahippocampal cortex
nTPM: 66.2
1850 Male, age 80, both hemispheres 78.5
2018 Male, age 76, both hemispheres 78.5
2693 Female, age 94, both hemispheres 75.4
1990 Female, age 91, right hemisphere 68.6
1933 Female, age 85, both hemispheres 67.5
2532 Female, age 72, left hemisphere 67.4
2245 Female, age 91, both hemispheres 67.3
2250 Female, age 67, right hemisphere 55.9
2622 Female, age 67, right hemisphere 52.8
2692 Male, age 74, both hemispheres 50.0
Perirhinal gyrus
nTPM: 79.5
1794 Male, age 80, right hemisphere 88.0
2521 Female, age 94, right hemisphere 84.0
1847 Female, age 91, left hemisphere 79.6
1841 Female, age 85, right hemisphere 74.9
2848 Male, age 76, right hemisphere 71.0
Subiculum
nTPM: 65.0
1901 Male, age 80, both hemispheres 87.5
1977 Female, age 85, both hemispheres 79.0
2042 Male, age 76, both hemispheres 74.6
2438 Female, age 94, left hemisphere 53.5
2619 Male, age 74, both hemispheres 48.5
2729 Female, age 91, right hemisphere 46.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 21.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 21.8
Samples: 197

Max nTPM: 58.2
Min nTPM: 5.5
Std nTPM: 8.2
Median nTPM: 21.2
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 58.2
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 42.4
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 42.2
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 41.9
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 41.1
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 40.6
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 40.1
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 39.1
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 38.9
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 38.3
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 37.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 54.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 54.6
FF:10169-103B7 60 years, female 68.5
FF:10153-102I9 76 years, female 40.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 72.7
Pig sample Sample description nTPM
Subiculum
nTPM: 52.4
Samples: 4

Max nTPM: 72.9
Min nTPM: 41.1
Sample A Female 72.9
Sample B Female 48.9
Sample C Male 41.1
Sample D Male 46.6
Dorsal hippocampus
nTPM: 72.8
Samples: 4

Max nTPM: 86.2
Min nTPM: 59.3
Sample A Female 86.2
Sample B Female 72.9
Sample C Male 59.3
Sample D Male 72.6
Entorhinal cortex
nTPM: 57.4
Samples: 4

Max nTPM: 67.7
Min nTPM: 49.4
Sample A Female 57.2
Sample B Female 67.7
Sample C Male 55.2
Sample D Male 49.4
Ventral hippocampus
nTPM: 55.0
Samples: 4

Max nTPM: 67.1
Min nTPM: 48.2
Sample A Female 51.3
Sample B Female 48.2
Sample C Male 53.5
Sample D Male 67.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 66.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 62.0
Samples: 4

Max nTPM: 67.1
Min nTPM: 56.2
Sample A Male 58.8
Sample B Male 65.9
Sample C Female 56.2
Sample D Female 67.1
Hippocampal formation
nTPM: 66.5
Samples: 4

Max nTPM: 78.8
Min nTPM: 53.1
Sample A Male 63.7
Sample B Male 70.5
Sample C Female 78.8
Sample D Female 53.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 12.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 12.5
74657928 Antisense, RP_060220_02_F07, Mouse strain C57BL/6J (56 days, male) 14.0
69549628 Antisense, RP_050301_01_D11, Mouse strain C57BL/6J (56 days, male) 11.0

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