MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:20.6 nTPM
HPA Brain:27.2 nTPM
GTEx:20.6 nTPM
FANTOM5:14.7 Scaled Tags Per Million
Pig:23.0 nTPM
Mouse:0.4 nTPM

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 27.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 20.9
2586 Male, age 75, left hemisphere 28.7
2666 Male, age 74, left hemisphere 26.0
2828 Female, age 72, unknown 24.9
1830 Male, age 51, unknown 21.8
1870 Female, age 42, unknown 21.7
1833 Male, age 53, unknown 20.7
2411 Female, age 72, unknown 18.8
1827 Male, age 72, unknown 17.1
2019 Male, age 18, unknown 16.7
2219 Male, age 76, both hemispheres 12.2
Dorsal raphe nucleus
nTPM: 24.0
2016 Female, age 72, unknown 26.1
1828 Male, age 53, unknown 25.3
2047 Male, age 72, unknown 23.1
2750 Male, age 76, both hemispheres 23.1
2298 Female, age 72, unknown 22.4
Inferior colliculus
nTPM: 18.0
1890 Male, age 53, unknown 19.7
1848 Female, age 42, unknown 18.6
2849 Male, age 72, unknown 17.9
2097 Female, age 72, unknown 15.8
Median raphe nucleus
nTPM: 24.6
2220 Male, age 76, midline 24.6
Periaquaductal grey, anterior
nTPM: 22.1
1795 Male, age 51, unknown 24.7
2502 Female, age 75, unknown 23.2
1947 Male, age 18, unknown 18.4
Periaquaductal grey, dorsal
nTPM: 24.5
2850 Male, age 76, both hemispheres 36.3
1831 Male, age 72, unknown 21.6
2464 Female, age 72, unknown 20.2
1840 Male, age 53, unknown 19.9
Periaquaductal grey, lateral
nTPM: 27.2
2140 Male, age 76, both hemispheres 35.1
2053 Male, age 18, unknown 26.3
2272 Male, age 74, both hemispheres 20.1
Pretectal area
nTPM: 18.3
2825 Male, age 18, unknown 23.2
2273 Male, age 74, both hemispheres 22.2
2316 Male, age 76, right hemisphere 20.6
2407 Male, age 75, both hemispheres 20.4
2224 Female, age 72, unknown 19.3
1815 Male, age 53, unknown 17.9
1817 Female, age 42, unknown 16.7
2667 Female, age 75, unknown 16.7
2007 Male, age 72, unknown 15.6
1944 Female, age 72, unknown 15.3
1816 Male, age 51, unknown 13.5
Red nucleus
nTPM: 22.4
2769 Male, age 72, unknown 25.9
2227 Male, age 72, unknown 24.9
2584 Male, age 75, left hemisphere 24.7
2503 Female, age 72, unknown 23.6
1865 Male, age 51, unknown 23.2
1904 Male, age 53, unknown 22.6
1954 Female, age 42, unknown 22.5
1821 Female, age 72, unknown 21.2
2725 Female, age 75, unknown 20.5
2823 Male, age 76, right hemisphere 20.3
2785 Male, age 18, unknown 19.7
2588 Male, age 74, left hemisphere 19.4
Substantia nigra
nTPM: 22.1
2699 Male, age 18, unknown 31.9
2665 Male, age 74, both hemispheres 25.6
2583 Male, age 75, right hemisphere 24.1
2590 Female, age 75, unknown 23.1
1851 Male, age 51, unknown 22.4
1916 Female, age 42, unknown 21.5
1941 Male, age 53, unknown 20.0
2241 Male, age 72, unknown 18.6
2409 Female, age 72, unknown 17.8
1889 Female, age 72, unknown 16.5
Superior colliculus
nTPM: 20.8
1995 Male, age 72, unknown 28.8
1913 Female, age 42, unknown 24.5
2664 Male, age 75, both hemispheres 22.0
1796 Male, age 53, unknown 21.5
2668 Female, age 75, unknown 21.5
1839 Male, age 51, unknown 19.9
2587 Male, age 74, left hemisphere 19.7
2087 Female, age 72, unknown 17.9
2261 Male, age 18, unknown 17.8
1895 Male, age 76, right hemisphere 14.1
Ventral tegmental area
nTPM: 23.2
2223 Female, age 72, unknown 27.4
1942 Male, age 51, unknown 24.5
2021 Male, age 53, unknown 24.1
1915 Female, age 42, unknown 22.9
2410 Female, age 72, unknown 20.4
2218 Male, age 76, both hemispheres 20.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 20.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 20.6
Samples: 139

Max nTPM: 46.7
Min nTPM: 4.9
Std nTPM: 8.2
Median nTPM: 19.8
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 46.7
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 46.6
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 45.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 43.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 42.9
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 39.4
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 38.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 36.3
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 35.4
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 33.4
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 33.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 14.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 14.7
FF:10158-103A5 76 years, female 14.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 23.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 21.4
Samples: 4

Max nTPM: 25.5
Min nTPM: 13.7
Sample A Female 21.8
Sample B Female 25.5
Sample C Male 13.7
Sample D Male 24.4
Midbrain
nTPM: 23.1
Samples: 4

Max nTPM: 50.3
Min nTPM: 11.9
Sample A Female 50.3
Sample B Female 15.6
Sample C Male 14.4
Sample D Male 11.9
Periaqueductal gray
nTPM: 22.1
Samples: 3

Max nTPM: 23.8
Min nTPM: 19.7
Sample B Female 19.7
Sample C Male 23.8
Sample D Male 22.8
Superior colliculi
nTPM: 18.8
Samples: 4

Max nTPM: 21.7
Min nTPM: 15.1
Sample A Female 21.7
Sample B Female 19.7
Sample C Male 15.1
Sample D Male 18.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 0.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.4
Samples: 4

Max nTPM: 0.6
Min nTPM: 0.2
Sample A Male 0.3
Sample B Male 0.2
Sample C Female 0.6
Sample D Female 0.5

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