MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:95.9 nTPM
HPA Brain:93.1 nTPM
GTEx:95.9 nTPM
FANTOM5:31.9 Scaled Tags Per Million
Pig:36.0 nTPM
Mouse:128.7 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 93.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 64.4
2586 Male, age 75, left hemisphere 111.7
2219 Male, age 76, both hemispheres 94.5
2828 Female, age 72, unknown 81.7
1827 Male, age 72, unknown 63.1
2666 Male, age 74, left hemisphere 56.7
1870 Female, age 42, unknown 56.3
2411 Female, age 72, unknown 54.7
1833 Male, age 53, unknown 52.5
1830 Male, age 51, unknown 45.5
2019 Male, age 18, unknown 26.7
Dorsal raphe nucleus
nTPM: 79.6
2047 Male, age 72, unknown 96.5
2298 Female, age 72, unknown 89.8
2016 Female, age 72, unknown 83.0
1828 Male, age 53, unknown 72.1
2750 Male, age 76, both hemispheres 56.6
Inferior colliculus
nTPM: 62.1
2849 Male, age 72, unknown 70.5
1890 Male, age 53, unknown 66.3
1848 Female, age 42, unknown 58.8
2097 Female, age 72, unknown 52.9
Median raphe nucleus
nTPM: 44.6
2220 Male, age 76, midline 44.6
Periaquaductal grey, anterior
nTPM: 73.1
1795 Male, age 51, unknown 81.2
1947 Male, age 18, unknown 76.9
2502 Female, age 75, unknown 61.3
Periaquaductal grey, dorsal
nTPM: 70.8
1840 Male, age 53, unknown 106.1
2464 Female, age 72, unknown 68.6
2850 Male, age 76, both hemispheres 63.9
1831 Male, age 72, unknown 44.7
Periaquaductal grey, lateral
nTPM: 64.1
2140 Male, age 76, both hemispheres 75.7
2053 Male, age 18, unknown 71.5
2272 Male, age 74, both hemispheres 45.2
Pretectal area
nTPM: 54.4
2224 Female, age 72, unknown 82.9
2825 Male, age 18, unknown 75.0
2667 Female, age 75, unknown 59.8
1816 Male, age 51, unknown 58.5
1944 Female, age 72, unknown 57.1
1817 Female, age 42, unknown 53.0
2316 Male, age 76, right hemisphere 50.1
1815 Male, age 53, unknown 49.0
2273 Male, age 74, both hemispheres 42.4
2007 Male, age 72, unknown 36.7
2407 Male, age 75, both hemispheres 34.0
Red nucleus
nTPM: 54.4
2503 Female, age 72, unknown 73.6
2227 Male, age 72, unknown 65.3
2769 Male, age 72, unknown 64.8
2725 Female, age 75, unknown 59.9
1821 Female, age 72, unknown 58.2
2823 Male, age 76, right hemisphere 57.0
1954 Female, age 42, unknown 54.1
1904 Male, age 53, unknown 50.4
2584 Male, age 75, left hemisphere 47.8
2588 Male, age 74, left hemisphere 47.8
1865 Male, age 51, unknown 44.5
2785 Male, age 18, unknown 29.6
Substantia nigra
nTPM: 93.1
2699 Male, age 18, unknown 167.9
1916 Female, age 42, unknown 139.1
1851 Male, age 51, unknown 95.9
2665 Male, age 74, both hemispheres 90.6
2241 Male, age 72, unknown 84.3
2409 Female, age 72, unknown 80.0
2590 Female, age 75, unknown 79.5
2583 Male, age 75, right hemisphere 72.1
1889 Female, age 72, unknown 63.7
1941 Male, age 53, unknown 58.2
Superior colliculus
nTPM: 52.6
1796 Male, age 53, unknown 73.4
2261 Male, age 18, unknown 62.5
2087 Female, age 72, unknown 59.9
2664 Male, age 75, both hemispheres 56.9
2668 Female, age 75, unknown 53.0
1995 Male, age 72, unknown 52.7
1839 Male, age 51, unknown 51.5
1913 Female, age 42, unknown 40.8
1895 Male, age 76, right hemisphere 38.1
2587 Male, age 74, left hemisphere 36.9
Ventral tegmental area
nTPM: 70.2
1915 Female, age 42, unknown 96.1
1942 Male, age 51, unknown 79.8
2410 Female, age 72, unknown 69.5
2218 Male, age 76, both hemispheres 68.8
2021 Male, age 53, unknown 60.8
2223 Female, age 72, unknown 46.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 95.9
GTEx sample id Sample description nTPM
55.786.9122.87.2213.3020406080100120140160180200220240260280
Brain - Substantia nigra
Average nTPM: 95.9
Samples: 139

Max nTPM: 284.9
Min nTPM: 7.2
Std nTPM: 56.1
Median nTPM: 86.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 284.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 271.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 248.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 238.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 233.8
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 213.3
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 207.0
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 203.7
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 196.9
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 186.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 181.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 31.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 31.9
FF:10158-103A5 76 years, female 31.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 36.0
Pig sample Sample description nTPM
29.636.042.425.346.6051015202530354045
 		Substantia nigra
nTPM: 36.0
Samples: 4

Max nTPM: 46.6
Min nTPM: 25.3
Sample A Female 46.6
Sample B Female 25.3
Sample C Male 31.0
Sample D Male 41.0
27.435.041.924.842.20510152025303540
 		Midbrain
nTPM: 34.3
Samples: 4

Max nTPM: 42.2
Min nTPM: 24.8
Sample A Female 42.2
Sample B Female 41.8
Sample C Male 28.3
Sample D Male 24.8
26.628.031.825.135.605101520253035
 		Periaqueductal gray
nTPM: 29.6
Samples: 3

Max nTPM: 35.6
Min nTPM: 25.1
Sample B Female 35.6
Sample C Male 28.0
Sample D Male 25.1
25.929.533.015.643.00510152025303540
 		Superior colliculi
nTPM: 29.4
Samples: 4

Max nTPM: 43.0
Min nTPM: 15.6
Sample A Female 43.0
Sample B Female 15.6
Sample C Male 29.3
Sample D Male 29.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 128.7
Mouse sample Sample description nTPM
119.1126.8136.4114.0146.9020406080100120140
 		Midbrain
nTPM: 128.7
Samples: 4

Max nTPM: 146.9
Min nTPM: 114.0
Sample A Male 146.9
Sample B Male 114.0
Sample C Female 120.8
Sample D Female 132.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
81600566 Antisense, RP_080625_04_G09, Mouse strain C57BL/6J (56 days, male) 0.3
100145352 Antisense, RP_110519_02_H04, Mouse strain C57BL/6J (56 days, male) 0.0

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