MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:833.9 nTPM
HPA Brain:270.5 nTPM
GTEx:833.9 nTPM
FANTOM5:239.8 Scaled Tags Per Million
Pig:43.2 nTPM
Mouse:419.1 nTPM
Allen mouse:1.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 270.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 223.8
2666 Male, age 74, left hemisphere 264.0
2019 Male, age 18, unknown 251.6
1870 Female, age 42, unknown 240.9
1827 Male, age 72, unknown 235.6
2411 Female, age 72, unknown 231.7
2219 Male, age 76, both hemispheres 209.7
1833 Male, age 53, unknown 205.4
1830 Male, age 51, unknown 205.2
2586 Male, age 75, left hemisphere 202.4
2828 Female, age 72, unknown 191.8
Dorsal raphe nucleus
nTPM: 208.9
2750 Male, age 76, both hemispheres 232.0
1828 Male, age 53, unknown 230.7
2047 Male, age 72, unknown 206.8
2298 Female, age 72, unknown 194.2
2016 Female, age 72, unknown 180.5
Inferior colliculus
nTPM: 196.9
2849 Male, age 72, unknown 211.7
1890 Male, age 53, unknown 204.6
2097 Female, age 72, unknown 197.1
1848 Female, age 42, unknown 174.2
Median raphe nucleus
nTPM: 246.9
2220 Male, age 76, midline 246.9
Periaquaductal grey, anterior
nTPM: 200.4
1947 Male, age 18, unknown 209.6
2502 Female, age 75, unknown 200.6
1795 Male, age 51, unknown 191.1
Periaquaductal grey, dorsal
nTPM: 165.4
2850 Male, age 76, both hemispheres 212.4
1831 Male, age 72, unknown 170.3
1840 Male, age 53, unknown 149.3
2464 Female, age 72, unknown 129.6
Periaquaductal grey, lateral
nTPM: 172.5
2053 Male, age 18, unknown 190.5
2272 Male, age 74, both hemispheres 168.2
2140 Male, age 76, both hemispheres 158.7
Pretectal area
nTPM: 228.5
1817 Female, age 42, unknown 292.2
2007 Male, age 72, unknown 290.9
1944 Female, age 72, unknown 267.6
1816 Male, age 51, unknown 254.5
1815 Male, age 53, unknown 251.1
2667 Female, age 75, unknown 215.3
2224 Female, age 72, unknown 201.2
2407 Male, age 75, both hemispheres 199.0
2825 Male, age 18, unknown 198.6
2273 Male, age 74, both hemispheres 172.3
2316 Male, age 76, right hemisphere 170.6
Red nucleus
nTPM: 270.5
2503 Female, age 72, unknown 331.2
2725 Female, age 75, unknown 325.7
1821 Female, age 72, unknown 324.7
1865 Male, age 51, unknown 318.5
1904 Male, age 53, unknown 258.4
2588 Male, age 74, left hemisphere 256.5
2785 Male, age 18, unknown 250.1
2823 Male, age 76, right hemisphere 243.8
1954 Female, age 42, unknown 241.4
2769 Male, age 72, unknown 240.5
2227 Male, age 72, unknown 238.4
2584 Male, age 75, left hemisphere 216.4
Substantia nigra
nTPM: 252.7
1916 Female, age 42, unknown 357.0
1941 Male, age 53, unknown 278.1
1889 Female, age 72, unknown 268.0
2699 Male, age 18, unknown 266.8
1851 Male, age 51, unknown 264.2
2665 Male, age 74, both hemispheres 252.0
2590 Female, age 75, unknown 220.4
2409 Female, age 72, unknown 215.9
2583 Male, age 75, right hemisphere 209.1
2241 Male, age 72, unknown 195.5
Superior colliculus
nTPM: 211.0
2587 Male, age 74, left hemisphere 285.1
1895 Male, age 76, right hemisphere 237.5
1796 Male, age 53, unknown 219.8
1995 Male, age 72, unknown 216.0
1913 Female, age 42, unknown 212.7
2668 Female, age 75, unknown 202.0
2087 Female, age 72, unknown 195.7
1839 Male, age 51, unknown 191.2
2261 Male, age 18, unknown 180.2
2664 Male, age 75, both hemispheres 169.6
Ventral tegmental area
nTPM: 218.3
2223 Female, age 72, unknown 260.3
1915 Female, age 42, unknown 256.6
2218 Male, age 76, both hemispheres 240.0
2410 Female, age 72, unknown 192.2
1942 Male, age 51, unknown 187.1
2021 Male, age 53, unknown 173.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 833.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 833.9
Samples: 139

Max nTPM: 2501.5
Min nTPM: 384.4
Std nTPM: 279.9
Median nTPM: 784.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 2501.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2156.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 1485.3
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 1421.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1312.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 1305.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1297.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1253.8
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 1252.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 1249.3
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1198.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 239.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 239.8
FF:10158-103A5 76 years, female 239.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 43.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 38.6
Samples: 4

Max nTPM: 55.8
Min nTPM: 23.8
Sample A Female 55.8
Sample B Female 33.2
Sample C Male 41.6
Sample D Male 23.8
Midbrain
nTPM: 41.2
Samples: 4

Max nTPM: 43.9
Min nTPM: 39.0
Sample A Female 40.1
Sample B Female 43.9
Sample C Male 41.8
Sample D Male 39.0
Periaqueductal gray
nTPM: 38.3
Samples: 3

Max nTPM: 43.4
Min nTPM: 33.0
Sample B Female 38.4
Sample C Male 43.4
Sample D Male 33.0
Superior colliculi
nTPM: 43.2
Samples: 4

Max nTPM: 55.5
Min nTPM: 27.3
Sample A Female 55.5
Sample B Female 27.3
Sample C Male 51.5
Sample D Male 38.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 419.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 419.1
Samples: 4

Max nTPM: 488.7
Min nTPM: 368.9
Sample A Male 488.7
Sample B Male 417.5
Sample C Female 368.9
Sample D Female 401.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.6
74426449 Antisense, RP_051121_02_B10, Mouse strain C57BL/6J (56 days, male) 1.6

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