MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:31.3 nTPM
HPA Brain:38.7 nTPM
GTEx:31.3 nTPM
FANTOM5:31.7 Scaled Tags Per Million
Pig:16.7 nTPM
Mouse:61.2 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 38.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 38.1
2666 Male, age 74, left hemisphere 50.7
2586 Male, age 75, left hemisphere 48.4
2828 Female, age 72, unknown 39.2
1870 Female, age 42, unknown 38.5
2411 Female, age 72, unknown 38.3
1827 Male, age 72, unknown 38.2
1833 Male, age 53, unknown 35.8
2019 Male, age 18, unknown 31.4
1830 Male, age 51, unknown 31.1
2219 Male, age 76, both hemispheres 29.8
Dorsal raphe nucleus
nTPM: 35.5
2298 Female, age 72, unknown 40.1
2047 Male, age 72, unknown 37.3
1828 Male, age 53, unknown 34.6
2750 Male, age 76, both hemispheres 32.9
2016 Female, age 72, unknown 32.6
Inferior colliculus
nTPM: 30.4
2849 Male, age 72, unknown 32.4
1890 Male, age 53, unknown 30.5
2097 Female, age 72, unknown 29.4
1848 Female, age 42, unknown 29.3
Median raphe nucleus
nTPM: 33.2
2220 Male, age 76, midline 33.2
Periaquaductal grey, anterior
nTPM: 36.7
1947 Male, age 18, unknown 38.6
2502 Female, age 75, unknown 35.8
1795 Male, age 51, unknown 35.7
Periaquaductal grey, dorsal
nTPM: 31.8
1831 Male, age 72, unknown 32.4
2464 Female, age 72, unknown 31.8
1840 Male, age 53, unknown 31.7
2850 Male, age 76, both hemispheres 31.4
Periaquaductal grey, lateral
nTPM: 29.9
2053 Male, age 18, unknown 32.2
2140 Male, age 76, both hemispheres 29.0
2272 Male, age 74, both hemispheres 28.5
Pretectal area
nTPM: 33.2
2825 Male, age 18, unknown 38.0
1817 Female, age 42, unknown 36.6
2407 Male, age 75, both hemispheres 36.5
1816 Male, age 51, unknown 36.3
1815 Male, age 53, unknown 35.8
2007 Male, age 72, unknown 33.2
2667 Female, age 75, unknown 32.9
2224 Female, age 72, unknown 31.8
1944 Female, age 72, unknown 31.4
2316 Male, age 76, right hemisphere 27.5
2273 Male, age 74, both hemispheres 25.6
Red nucleus
nTPM: 36.6
2584 Male, age 75, left hemisphere 44.0
2588 Male, age 74, left hemisphere 39.9
1865 Male, age 51, unknown 38.8
2725 Female, age 75, unknown 38.0
1904 Male, age 53, unknown 36.9
1821 Female, age 72, unknown 36.3
2769 Male, age 72, unknown 35.1
2823 Male, age 76, right hemisphere 34.6
2503 Female, age 72, unknown 34.4
1954 Female, age 42, unknown 34.3
2227 Male, age 72, unknown 33.7
2785 Male, age 18, unknown 33.1
Substantia nigra
nTPM: 38.7
1916 Female, age 42, unknown 45.5
1851 Male, age 51, unknown 44.1
2583 Male, age 75, right hemisphere 42.2
2699 Male, age 18, unknown 41.0
2241 Male, age 72, unknown 38.3
1941 Male, age 53, unknown 38.0
2665 Male, age 74, both hemispheres 36.6
1889 Female, age 72, unknown 34.6
2409 Female, age 72, unknown 34.1
2590 Female, age 75, unknown 32.4
Superior colliculus
nTPM: 35.3
2664 Male, age 75, both hemispheres 43.1
2668 Female, age 75, unknown 41.2
1796 Male, age 53, unknown 35.3
1913 Female, age 42, unknown 35.3
1839 Male, age 51, unknown 34.2
1995 Male, age 72, unknown 33.9
2261 Male, age 18, unknown 33.3
1895 Male, age 76, right hemisphere 32.7
2087 Female, age 72, unknown 32.1
2587 Male, age 74, left hemisphere 31.8
Ventral tegmental area
nTPM: 36.4
1915 Female, age 42, unknown 41.7
2410 Female, age 72, unknown 38.3
2021 Male, age 53, unknown 35.8
2223 Female, age 72, unknown 35.1
1942 Male, age 51, unknown 34.5
2218 Male, age 76, both hemispheres 32.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 31.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 31.3
Samples: 139

Max nTPM: 55.2
Min nTPM: 19.6
Std nTPM: 5.2
Median nTPM: 30.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 55.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 52.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 43.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 43.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 43.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 41.5
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 41.4
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 39.6
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 38.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 38.5
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 38.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 31.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 31.7
FF:10158-103A5 76 years, female 31.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 16.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 16.7
Samples: 4

Max nTPM: 20.5
Min nTPM: 14.2
Sample A Female 20.5
Sample B Female 14.2
Sample C Male 17.0
Sample D Male 15.2
Midbrain
nTPM: 16.7
Samples: 4

Max nTPM: 22.1
Min nTPM: 13.9
Sample A Female 22.1
Sample B Female 16.6
Sample C Male 14.0
Sample D Male 13.9
Periaqueductal gray
nTPM: 14.8
Samples: 3

Max nTPM: 16.1
Min nTPM: 13.9
Sample B Female 14.3
Sample C Male 16.1
Sample D Male 13.9
Superior colliculi
nTPM: 15.8
Samples: 4

Max nTPM: 18.2
Min nTPM: 13.7
Sample A Female 18.2
Sample B Female 13.7
Sample C Male 15.4
Sample D Male 15.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 61.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 61.1
Samples: 4

Max nTPM: 66.2
Min nTPM: 58.0
Sample A Male 58.6
Sample B Male 58.0
Sample C Female 66.2
Sample D Female 61.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
80514013 Antisense, RP_071213_02_E06, Mouse strain C57BL/6J (56 days, male) 0.4

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