MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:79.5 nTPM
HPA Brain:41.3 nTPM
GTEx:79.5 nTPM
FANTOM5:47.0 Scaled Tags Per Million
Pig:20.5 nTPM
Mouse:33.1 nTPM
Allen mouse:9.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 41.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 39.0
2586 Male, age 75, left hemisphere 67.3
1827 Male, age 72, unknown 45.5
2666 Male, age 74, left hemisphere 45.2
2019 Male, age 18, unknown 39.4
2828 Female, age 72, unknown 36.7
2411 Female, age 72, unknown 34.7
1870 Female, age 42, unknown 34.4
2219 Male, age 76, both hemispheres 29.2
1833 Male, age 53, unknown 28.8
1830 Male, age 51, unknown 28.5
Dorsal raphe nucleus
nTPM: 35.3
2298 Female, age 72, unknown 41.2
2047 Male, age 72, unknown 36.2
1828 Male, age 53, unknown 35.4
2016 Female, age 72, unknown 34.2
2750 Male, age 76, both hemispheres 29.4
Inferior colliculus
nTPM: 34.4
2097 Female, age 72, unknown 44.2
1890 Male, age 53, unknown 33.5
1848 Female, age 42, unknown 32.4
2849 Male, age 72, unknown 27.5
Median raphe nucleus
nTPM: 31.9
2220 Male, age 76, midline 31.9
Periaquaductal grey, anterior
nTPM: 40.1
1795 Male, age 51, unknown 42.3
1947 Male, age 18, unknown 41.9
2502 Female, age 75, unknown 36.0
Periaquaductal grey, dorsal
nTPM: 29.5
1831 Male, age 72, unknown 32.4
1840 Male, age 53, unknown 31.3
2464 Female, age 72, unknown 29.5
2850 Male, age 76, both hemispheres 24.6
Periaquaductal grey, lateral
nTPM: 29.6
2053 Male, age 18, unknown 33.0
2140 Male, age 76, both hemispheres 29.6
2272 Male, age 74, both hemispheres 26.1
Pretectal area
nTPM: 41.2
1816 Male, age 51, unknown 57.0
2007 Male, age 72, unknown 52.7
1817 Female, age 42, unknown 51.2
1944 Female, age 72, unknown 46.8
1815 Male, age 53, unknown 45.1
2407 Male, age 75, both hemispheres 38.9
2667 Female, age 75, unknown 37.6
2825 Male, age 18, unknown 37.2
2224 Female, age 72, unknown 30.6
2273 Male, age 74, both hemispheres 28.0
2316 Male, age 76, right hemisphere 28.0
Red nucleus
nTPM: 35.1
2584 Male, age 75, left hemisphere 41.4
1821 Female, age 72, unknown 41.1
2725 Female, age 75, unknown 39.0
2503 Female, age 72, unknown 37.2
2785 Male, age 18, unknown 36.0
1954 Female, age 42, unknown 33.7
2588 Male, age 74, left hemisphere 33.6
2769 Male, age 72, unknown 33.3
1865 Male, age 51, unknown 32.4
2227 Male, age 72, unknown 32.3
2823 Male, age 76, right hemisphere 30.9
1904 Male, age 53, unknown 30.4
Substantia nigra
nTPM: 41.3
2583 Male, age 75, right hemisphere 51.8
1941 Male, age 53, unknown 46.8
2665 Male, age 74, both hemispheres 46.8
1916 Female, age 42, unknown 46.7
1889 Female, age 72, unknown 45.0
1851 Male, age 51, unknown 43.0
2241 Male, age 72, unknown 36.8
2590 Female, age 75, unknown 35.1
2409 Female, age 72, unknown 32.0
2699 Male, age 18, unknown 29.5
Superior colliculus
nTPM: 37.7
2668 Female, age 75, unknown 45.8
2664 Male, age 75, both hemispheres 44.1
2261 Male, age 18, unknown 43.7
1796 Male, age 53, unknown 42.2
2087 Female, age 72, unknown 41.4
1895 Male, age 76, right hemisphere 33.9
1839 Male, age 51, unknown 33.2
1995 Male, age 72, unknown 31.7
1913 Female, age 42, unknown 31.5
2587 Male, age 74, left hemisphere 29.3
Ventral tegmental area
nTPM: 34.0
1915 Female, age 42, unknown 37.7
2410 Female, age 72, unknown 35.8
1942 Male, age 51, unknown 33.9
2218 Male, age 76, both hemispheres 33.8
2021 Male, age 53, unknown 32.6
2223 Female, age 72, unknown 30.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 79.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 79.5
Samples: 139

Max nTPM: 141.5
Min nTPM: 44.7
Std nTPM: 18.0
Median nTPM: 79.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 141.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 128.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 121.6
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 120.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 120.2
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 117.0
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 116.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 113.9
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 113.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 110.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 109.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 47.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 47.0
FF:10158-103A5 76 years, female 47.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 20.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 19.0
Samples: 4

Max nTPM: 22.1
Min nTPM: 16.8
Sample A Female 22.1
Sample B Female 17.3
Sample C Male 19.6
Sample D Male 16.8
Midbrain
nTPM: 20.5
Samples: 4

Max nTPM: 23.8
Min nTPM: 18.1
Sample A Female 21.2
Sample B Female 18.1
Sample C Male 23.8
Sample D Male 19.0
Periaqueductal gray
nTPM: 16.0
Samples: 3

Max nTPM: 17.9
Min nTPM: 14.4
Sample B Female 15.7
Sample C Male 17.9
Sample D Male 14.4
Superior colliculi
nTPM: 20.3
Samples: 4

Max nTPM: 23.1
Min nTPM: 17.5
Sample A Female 21.1
Sample B Female 17.5
Sample C Male 23.1
Sample D Male 19.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 33.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 33.1
Samples: 4

Max nTPM: 35.5
Min nTPM: 31.8
Sample A Male 32.2
Sample B Male 32.7
Sample C Female 31.8
Sample D Female 35.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 9.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.3
81600090 Antisense, RP_080108_02_D06, Mouse strain C57BL/6J (56 days, male) 14.2
68441460 Antisense, RP_041214_02_D05, Mouse strain C57BL/6J (56 days, male) 4.5

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