HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:75.0 nTPM
HPA Brain:36.4 nTPM
GTEx:75.0 nTPM
FANTOM5:30.1 Scaled Tags Per Million
Pig:18.4 nTPM
Mouse:33.7 nTPM
Allen mouse:13.4 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA005701
Glial cells Low
Neuronal cells Low


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 36.4
Sample id Sample description nTPM
Hippocampus
nTPM: 34.2
1898 Male, age 80, left hemisphere 44.9
2148 Female, age 91, left hemisphere 35.5
2621 Female, age 67, right hemisphere 34.0
2529 Female, age 94, left hemisphere 33.3
1855 Male, age 76, left hemisphere 30.6
1911 Female, age 85, right hemisphere 26.9
Dentate gyrus
nTPM: 30.8
1927 Female, age 91, both hemispheres 37.2
2530 Female, age 94, left hemisphere 32.7
2010 Male, age 76, both hemispheres 31.7
2528 Male, age 74, both hemispheres 30.4
2531 Female, age 67, both hemispheres 27.1
2246 Female, age 85, both hemispheres 25.5
Entorhinal gyrus
nTPM: 33.3
1938 Female, age 85, left hemisphere 37.0
2764 Male, age 80, right hemisphere 36.4
2613 Female, age 94, left hemisphere 33.4
2686 Male, age 75, right hemisphere 33.3
1787 Male, age 76, left hemisphere 32.9
2117 Female, age 91, right hemisphere 26.6
Hippocampus, CA1
nTPM: 33.4
2749 Male, age 80, left hemisphere 50.1
1873 Female, age 85, both hemispheres 31.9
2527 Male, age 74, both hemispheres 29.2
2082 Female, age 91, right hemisphere 28.4
2045 Male, age 76, both hemispheres 27.5
Hippocampus, CA2
nTPM: 34.0
1963 Male, age 80, left hemisphere 41.2
1892 Male, age 76, both hemispheres 38.2
2437 Female, age 94, left hemisphere 37.1
1940 Female, age 85, left hemisphere 32.5
2249 Male, age 74, both hemispheres 29.2
2113 Female, age 91, right hemisphere 25.8
Hippocampus, CA3
nTPM: 36.4
2436 Male, age 74, both hemispheres 42.2
2137 Male, age 80, left hemisphere 40.5
1867 Male, age 76, both hemispheres 38.5
2861 Female, age 67, both hemispheres 36.3
1891 Female, age 85, both hemispheres 33.0
2620 Female, age 94, left hemisphere 27.7
Parahippocampal cortex
nTPM: 30.1
1850 Male, age 80, both hemispheres 37.3
1933 Female, age 85, both hemispheres 35.8
1990 Female, age 91, right hemisphere 33.4
2693 Female, age 94, both hemispheres 32.2
2018 Male, age 76, both hemispheres 28.9
2692 Male, age 74, both hemispheres 28.0
2245 Female, age 91, both hemispheres 27.3
2532 Female, age 72, left hemisphere 27.1
2250 Female, age 67, right hemisphere 27.0
2622 Female, age 67, right hemisphere 23.9
Perirhinal gyrus
nTPM: 34.2
1847 Female, age 91, left hemisphere 39.5
1794 Male, age 80, right hemisphere 39.3
1841 Female, age 85, right hemisphere 35.3
2521 Female, age 94, right hemisphere 28.8
2848 Male, age 76, right hemisphere 28.1
Subiculum
nTPM: 29.4
1977 Female, age 85, both hemispheres 37.0
1901 Male, age 80, both hemispheres 32.7
2729 Female, age 91, right hemisphere 28.5
2042 Male, age 76, both hemispheres 27.8
2619 Male, age 74, both hemispheres 26.8
2438 Female, age 94, left hemisphere 23.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 75.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 75.0
Samples: 197

Max nTPM: 135.0
Min nTPM: 42.0
Std nTPM: 17.0
Median nTPM: 74.0
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 135.0
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 134.5
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 134.0
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 120.7
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 117.0
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 116.4
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 113.0
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 111.7
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 110.2
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 106.2
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 104.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 30.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 30.1
FF:10153-102I9 76 years, female 36.5
FF:10169-103B7 60 years, female 23.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 18.4
Pig sample Sample description nTPM
Subiculum
nTPM: 17.4
Samples: 4

Max nTPM: 21.1
Min nTPM: 15.4
Sample A Female 21.1
Sample B Female 16.3
Sample C Male 16.8
Sample D Male 15.4
Dorsal hippocampus
nTPM: 18.4
Samples: 4

Max nTPM: 19.9
Min nTPM: 16.5
Sample A Female 19.9
Sample B Female 18.3
Sample C Male 18.9
Sample D Male 16.5
Entorhinal cortex
nTPM: 17.1
Samples: 4

Max nTPM: 17.8
Min nTPM: 15.9
Sample A Female 17.0
Sample B Female 17.8
Sample C Male 17.8
Sample D Male 15.9
Ventral hippocampus
nTPM: 17.2
Samples: 4

Max nTPM: 19.8
Min nTPM: 14.2
Sample A Female 16.8
Sample B Female 14.2
Sample C Male 19.8
Sample D Male 18.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 33.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 33.7
Samples: 4

Max nTPM: 37.2
Min nTPM: 31.1
Sample A Male 31.1
Sample B Male 33.2
Sample C Female 33.3
Sample D Female 37.2
Hippocampal formation
nTPM: 32.7
Samples: 4

Max nTPM: 34.7
Min nTPM: 30.7
Sample A Male 33.2
Sample B Male 30.7
Sample C Female 34.7
Sample D Female 32.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 13.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 13.4
81600090 Antisense, RP_080108_02_D06, Mouse strain C57BL/6J (56 days, male) 16.3
68441460 Antisense, RP_041214_02_D05, Mouse strain C57BL/6J (56 days, male) 10.5

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