MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:4.6 nTPM
HPA Brain:13.9 nTPM
GTEx:4.6 nTPM
FANTOM5:43.9 Scaled Tags Per Million
Pig:22.7 nTPM
Mouse:26.9 nTPM
Allen mouse:0.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 13.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 12.6
2019 Male, age 18, unknown 21.0
2411 Female, age 72, unknown 13.7
1870 Female, age 42, unknown 13.0
2219 Male, age 76, both hemispheres 13.0
1827 Male, age 72, unknown 12.2
2586 Male, age 75, left hemisphere 11.3
2828 Female, age 72, unknown 11.0
1830 Male, age 51, unknown 10.6
2666 Male, age 74, left hemisphere 10.3
1833 Male, age 53, unknown 10.1
Dorsal raphe nucleus
nTPM: 13.0
2298 Female, age 72, unknown 15.4
2047 Male, age 72, unknown 13.1
2750 Male, age 76, both hemispheres 13.0
2016 Female, age 72, unknown 12.1
1828 Male, age 53, unknown 11.7
Inferior colliculus
nTPM: 12.0
2097 Female, age 72, unknown 15.3
1890 Male, age 53, unknown 12.4
1848 Female, age 42, unknown 11.2
2849 Male, age 72, unknown 9.2
Median raphe nucleus
nTPM: 12.0
2220 Male, age 76, midline 12.0
Periaquaductal grey, anterior
nTPM: 11.9
2502 Female, age 75, unknown 13.7
1795 Male, age 51, unknown 11.6
1947 Male, age 18, unknown 10.5
Periaquaductal grey, dorsal
nTPM: 11.9
2464 Female, age 72, unknown 12.3
2850 Male, age 76, both hemispheres 12.0
1831 Male, age 72, unknown 11.7
1840 Male, age 53, unknown 11.6
Periaquaductal grey, lateral
nTPM: 12.2
2272 Male, age 74, both hemispheres 13.3
2140 Male, age 76, both hemispheres 12.2
2053 Male, age 18, unknown 11.2
Pretectal area
nTPM: 13.9
1817 Female, age 42, unknown 19.5
2007 Male, age 72, unknown 17.7
2273 Male, age 74, both hemispheres 16.2
1815 Male, age 53, unknown 15.9
1816 Male, age 51, unknown 14.3
2224 Female, age 72, unknown 13.3
1944 Female, age 72, unknown 12.8
2316 Male, age 76, right hemisphere 11.6
2667 Female, age 75, unknown 11.4
2407 Male, age 75, both hemispheres 10.2
2825 Male, age 18, unknown 10.1
Red nucleus
nTPM: 12.6
2785 Male, age 18, unknown 18.1
1865 Male, age 51, unknown 14.4
1821 Female, age 72, unknown 13.5
1904 Male, age 53, unknown 13.0
2725 Female, age 75, unknown 13.0
2227 Male, age 72, unknown 12.9
2503 Female, age 72, unknown 12.5
2769 Male, age 72, unknown 12.1
1954 Female, age 42, unknown 11.1
2823 Male, age 76, right hemisphere 11.0
2584 Male, age 75, left hemisphere 10.6
2588 Male, age 74, left hemisphere 9.5
Substantia nigra
nTPM: 11.8
2409 Female, age 72, unknown 15.6
1889 Female, age 72, unknown 15.3
1851 Male, age 51, unknown 13.4
2583 Male, age 75, right hemisphere 12.2
1941 Male, age 53, unknown 11.7
1916 Female, age 42, unknown 11.4
2590 Female, age 75, unknown 11.3
2665 Male, age 74, both hemispheres 10.0
2241 Male, age 72, unknown 9.1
2699 Male, age 18, unknown 8.0
Superior colliculus
nTPM: 12.5
1995 Male, age 72, unknown 15.7
1913 Female, age 42, unknown 13.2
2587 Male, age 74, left hemisphere 13.0
2668 Female, age 75, unknown 12.7
2087 Female, age 72, unknown 12.6
1796 Male, age 53, unknown 12.4
1839 Male, age 51, unknown 12.1
2261 Male, age 18, unknown 11.7
1895 Male, age 76, right hemisphere 10.8
2664 Male, age 75, both hemispheres 10.2
Ventral tegmental area
nTPM: 11.0
2410 Female, age 72, unknown 12.4
2021 Male, age 53, unknown 11.8
2223 Female, age 72, unknown 11.6
2218 Male, age 76, both hemispheres 10.6
1915 Female, age 42, unknown 10.0
1942 Male, age 51, unknown 9.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 4.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 4.6
Samples: 139

Max nTPM: 10.5
Min nTPM: 2.1
Std nTPM: 1.3
Median nTPM: 4.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 10.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 8.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 7.6
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 7.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 7.1
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 7.0
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 6.9
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 6.8
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 6.8
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 6.6
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 6.6
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 43.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 43.9
FF:10158-103A5 76 years, female 43.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 22.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 21.8
Samples: 4

Max nTPM: 25.5
Min nTPM: 19.7
Sample A Female 25.5
Sample B Female 19.7
Sample C Male 22.4
Sample D Male 19.7
Midbrain
nTPM: 22.7
Samples: 4

Max nTPM: 27.4
Min nTPM: 20.5
Sample A Female 27.4
Sample B Female 22.2
Sample C Male 20.6
Sample D Male 20.5
Periaqueductal gray
nTPM: 20.2
Samples: 3

Max nTPM: 20.5
Min nTPM: 19.9
Sample B Female 20.1
Sample C Male 19.9
Sample D Male 20.5
Superior colliculi
nTPM: 22.2
Samples: 4

Max nTPM: 24.3
Min nTPM: 19.7
Sample A Female 22.0
Sample B Female 24.3
Sample C Male 22.6
Sample D Male 19.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 26.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 26.9
Samples: 4

Max nTPM: 27.8
Min nTPM: 24.2
Sample A Male 24.2
Sample B Male 27.6
Sample C Female 27.8
Sample D Female 27.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.8
68745137 Antisense, RP_050210_01_C10, Mouse strain C57BL/6J (56 days, male) 0.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org