MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.3 nTPM
HPA Brain:30.1 nTPM
GTEx:9.3 nTPM
FANTOM5:39.4 Scaled Tags Per Million
Pig:21.0 nTPM
Mouse:32.9 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 30.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 24.4
2019 Male, age 18, unknown 28.1
2586 Male, age 75, left hemisphere 27.0
2411 Female, age 72, unknown 26.2
1827 Male, age 72, unknown 26.1
1870 Female, age 42, unknown 25.7
1833 Male, age 53, unknown 24.6
1830 Male, age 51, unknown 22.8
2828 Female, age 72, unknown 22.6
2666 Male, age 74, left hemisphere 20.7
2219 Male, age 76, both hemispheres 20.2
Dorsal raphe nucleus
nTPM: 26.7
2298 Female, age 72, unknown 30.9
2750 Male, age 76, both hemispheres 28.1
2047 Male, age 72, unknown 26.6
1828 Male, age 53, unknown 25.0
2016 Female, age 72, unknown 22.7
Inferior colliculus
nTPM: 22.9
2097 Female, age 72, unknown 25.0
1890 Male, age 53, unknown 23.6
1848 Female, age 42, unknown 23.3
2849 Male, age 72, unknown 19.8
Median raphe nucleus
nTPM: 30.0
2220 Male, age 76, midline 30.0
Periaquaductal grey, anterior
nTPM: 26.0
1947 Male, age 18, unknown 27.2
2502 Female, age 75, unknown 26.2
1795 Male, age 51, unknown 24.6
Periaquaductal grey, dorsal
nTPM: 25.2
1831 Male, age 72, unknown 26.3
2850 Male, age 76, both hemispheres 26.1
1840 Male, age 53, unknown 24.6
2464 Female, age 72, unknown 23.9
Periaquaductal grey, lateral
nTPM: 23.5
2272 Male, age 74, both hemispheres 26.1
2053 Male, age 18, unknown 22.4
2140 Male, age 76, both hemispheres 21.9
Pretectal area
nTPM: 30.1
1944 Female, age 72, unknown 41.4
1816 Male, age 51, unknown 41.0
1815 Male, age 53, unknown 35.2
2007 Male, age 72, unknown 34.5
1817 Female, age 42, unknown 32.5
2224 Female, age 72, unknown 30.8
2273 Male, age 74, both hemispheres 26.0
2667 Female, age 75, unknown 25.3
2316 Male, age 76, right hemisphere 22.9
2825 Male, age 18, unknown 21.6
2407 Male, age 75, both hemispheres 20.2
Red nucleus
nTPM: 24.4
1821 Female, age 72, unknown 28.6
2785 Male, age 18, unknown 26.8
2725 Female, age 75, unknown 25.7
1954 Female, age 42, unknown 25.4
1904 Male, age 53, unknown 25.0
2503 Female, age 72, unknown 24.1
1865 Male, age 51, unknown 23.9
2823 Male, age 76, right hemisphere 23.9
2584 Male, age 75, left hemisphere 23.7
2769 Male, age 72, unknown 22.2
2227 Male, age 72, unknown 21.6
2588 Male, age 74, left hemisphere 21.6
Substantia nigra
nTPM: 28.2
1889 Female, age 72, unknown 32.2
2241 Male, age 72, unknown 31.4
1916 Female, age 42, unknown 31.1
2590 Female, age 75, unknown 29.5
2409 Female, age 72, unknown 28.5
2665 Male, age 74, both hemispheres 28.1
1851 Male, age 51, unknown 26.9
2583 Male, age 75, right hemisphere 26.4
1941 Male, age 53, unknown 25.0
2699 Male, age 18, unknown 22.7
Superior colliculus
nTPM: 26.7
2261 Male, age 18, unknown 34.7
2087 Female, age 72, unknown 32.4
1913 Female, age 42, unknown 27.5
2668 Female, age 75, unknown 27.3
1796 Male, age 53, unknown 25.8
1995 Male, age 72, unknown 25.2
2664 Male, age 75, both hemispheres 25.0
2587 Male, age 74, left hemisphere 23.8
1839 Male, age 51, unknown 23.5
1895 Male, age 76, right hemisphere 21.9
Ventral tegmental area
nTPM: 26.2
2410 Female, age 72, unknown 29.2
2218 Male, age 76, both hemispheres 28.5
2021 Male, age 53, unknown 25.3
1915 Female, age 42, unknown 25.1
1942 Male, age 51, unknown 25.0
2223 Female, age 72, unknown 24.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 9.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.3
Samples: 139

Max nTPM: 19.0
Min nTPM: 5.2
Std nTPM: 2.1
Median nTPM: 8.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 19.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 18.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 15.3
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 14.4
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 14.0
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 13.8
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 13.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 13.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 13.6
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 12.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 12.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 39.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 39.4
FF:10158-103A5 76 years, female 39.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 21.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 20.4
Samples: 4

Max nTPM: 23.7
Min nTPM: 16.7
Sample A Female 23.7
Sample B Female 16.7
Sample C Male 23.3
Sample D Male 17.7
Midbrain
nTPM: 21.0
Samples: 4

Max nTPM: 22.9
Min nTPM: 18.2
Sample A Female 22.9
Sample B Female 21.0
Sample C Male 18.2
Sample D Male 21.9
Periaqueductal gray
nTPM: 15.9
Samples: 3

Max nTPM: 16.3
Min nTPM: 15.4
Sample B Female 16.3
Sample C Male 16.1
Sample D Male 15.4
Superior colliculi
nTPM: 19.4
Samples: 4

Max nTPM: 23.0
Min nTPM: 17.7
Sample A Female 23.0
Sample B Female 17.7
Sample C Male 18.5
Sample D Male 18.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 32.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 32.9
Samples: 4

Max nTPM: 34.5
Min nTPM: 29.9
Sample A Male 29.9
Sample B Male 34.2
Sample C Female 34.5
Sample D Female 33.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
100146094 Antisense, RP_110421_02_B12, Mouse strain C57BL/6J (56 days, male) 0.1
77414585 Antisense, RP_070205_01_H05, Mouse strain C57BL/6J (56 days, male) 0.0
77620423 Antisense, RP_070205_01_H05, Mouse strain C57BL/6J (56 days, male) 0.0

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