HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni
Consensus:16.2 nTPM
HPA Brain:21.3 nTPM
GTEx:16.2 nTPM
FANTOM5:29.0 Scaled Tags Per Million
Pig:42.1 nTPM
Mouse:100.5 nTPM
Allen mouse:1.6 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA047152Antibody HPA050547
Glial cells HighNot detected
Neuronal cells HighLow





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 21.3
Sample id Sample description nTPM
Hippocampus
nTPM: 17.8
1898 Male, age 80, left hemisphere 23.7
1855 Male, age 76, left hemisphere 19.7
2621 Female, age 67, right hemisphere 16.9
2148 Female, age 91, left hemisphere 16.0
2529 Female, age 94, left hemisphere 15.6
1911 Female, age 85, right hemisphere 14.8
Dentate gyrus
nTPM: 17.6
2010 Male, age 76, both hemispheres 21.9
1927 Female, age 91, both hemispheres 21.7
2528 Male, age 74, both hemispheres 17.0
2246 Female, age 85, both hemispheres 16.6
2531 Female, age 67, both hemispheres 16.0
2530 Female, age 94, left hemisphere 12.1
Entorhinal gyrus
nTPM: 15.3
1938 Female, age 85, left hemisphere 19.5
1787 Male, age 76, left hemisphere 16.7
2764 Male, age 80, right hemisphere 16.6
2117 Female, age 91, right hemisphere 13.8
2686 Male, age 75, right hemisphere 12.8
2613 Female, age 94, left hemisphere 12.3
Hippocampus, CA1
nTPM: 21.3
2749 Male, age 80, left hemisphere 27.8
2045 Male, age 76, both hemispheres 26.0
1873 Female, age 85, both hemispheres 21.8
2527 Male, age 74, both hemispheres 15.9
2082 Female, age 91, right hemisphere 15.0
Hippocampus, CA2
nTPM: 19.3
1892 Male, age 76, both hemispheres 29.8
1963 Male, age 80, left hemisphere 23.2
2249 Male, age 74, both hemispheres 17.6
1940 Female, age 85, left hemisphere 17.0
2113 Female, age 91, right hemisphere 14.4
2437 Female, age 94, left hemisphere 14.0
Hippocampus, CA3
nTPM: 18.4
1867 Male, age 76, both hemispheres 24.7
2436 Male, age 74, both hemispheres 20.2
2137 Male, age 80, left hemisphere 19.9
1891 Female, age 85, both hemispheres 17.0
2620 Female, age 94, left hemisphere 15.8
2861 Female, age 67, both hemispheres 13.1
Parahippocampal cortex
nTPM: 16.8
2018 Male, age 76, both hemispheres 21.3
1850 Male, age 80, both hemispheres 20.8
1933 Female, age 85, both hemispheres 19.6
2250 Female, age 67, right hemisphere 19.4
1990 Female, age 91, right hemisphere 15.9
2245 Female, age 91, both hemispheres 15.6
2692 Male, age 74, both hemispheres 14.3
2693 Female, age 94, both hemispheres 14.0
2532 Female, age 72, left hemisphere 13.5
2622 Female, age 67, right hemisphere 13.4
Perirhinal gyrus
nTPM: 19.4
1847 Female, age 91, left hemisphere 22.6
1794 Male, age 80, right hemisphere 21.0
1841 Female, age 85, right hemisphere 20.5
2848 Male, age 76, right hemisphere 18.1
2521 Female, age 94, right hemisphere 14.8
Subiculum
nTPM: 16.7
1977 Female, age 85, both hemispheres 19.5
2042 Male, age 76, both hemispheres 18.8
1901 Male, age 80, both hemispheres 18.6
2729 Female, age 91, right hemisphere 16.3
2619 Male, age 74, both hemispheres 14.2
2438 Female, age 94, left hemisphere 12.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 16.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 16.2
Samples: 197

Max nTPM: 31.7
Min nTPM: 8.4
Std nTPM: 4.2
Median nTPM: 15.8
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 31.7
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 31.1
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 28.5
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 27.9
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 26.7
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 26.6
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 25.7
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 25.6
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 25.0
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 24.2
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 24.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 29.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 29.0
FF:10169-103B7 60 years, female 32.1
FF:10153-102I9 76 years, female 25.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 42.1
Pig sample Sample description nTPM
Subiculum
nTPM: 36.8
Samples: 4

Max nTPM: 43.6
Min nTPM: 34.1
Sample A Female 43.6
Sample B Female 34.9
Sample C Male 34.1
Sample D Male 34.7
Dorsal hippocampus
nTPM: 42.1
Samples: 4

Max nTPM: 50.3
Min nTPM: 36.6
Sample A Female 50.3
Sample B Female 44.2
Sample C Male 36.6
Sample D Male 37.4
Entorhinal cortex
nTPM: 37.1
Samples: 4

Max nTPM: 40.1
Min nTPM: 34.3
Sample A Female 40.1
Sample B Female 39.3
Sample C Male 34.3
Sample D Male 34.5
Ventral hippocampus
nTPM: 37.4
Samples: 4

Max nTPM: 44.5
Min nTPM: 30.8
Sample A Female 44.5
Sample B Female 30.8
Sample C Male 35.3
Sample D Male 39.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 100.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 94.4
Samples: 4

Max nTPM: 98.8
Min nTPM: 86.5
Sample A Male 86.5
Sample B Male 98.8
Sample C Female 94.5
Sample D Female 97.7
Hippocampal formation
nTPM: 100.5
Samples: 4

Max nTPM: 106.1
Min nTPM: 94.7
Sample A Male 102.9
Sample B Male 94.7
Sample C Female 106.1
Sample D Female 98.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.6
68797502 Antisense, RP_050126_02_A02, Mouse strain C57BL/6J (56 days, male) 1.6

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