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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
365.3
nTPM
Monaco:
1526.6
nTPM
Schmiedel:
133.3
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
365.3
HPA sample
nTPM
Memory B-cell nTPM: 365.3
Samples: 6
Max nTPM: 516.2
Min nTPM: 119.2
P10809_1017
324.7
P10809_1025
516.2
P10809_1044
119.2
P10809_1063
394.0
P10809_1092
456.2
P10809_1105
381.3
Naive B-cell nTPM: 173.0
Samples: 6
Max nTPM: 404.9
Min nTPM: 66.0
P10809_1011
66.0
P10809_1029
154.6
P10809_1048
404.9
P10809_1067
144.3
P10809_1091
153.0
P10809_1104
115.2
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
1526.6
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 789.6
Samples: 4
Max nTPM: 1307.3
Min nTPM: 445.0
RHH5310_R3677
586.7
RHH5218_R3590
819.4
RHH5247_R3619
1307.3
RHH5276_R3648
445.0
Naive B-cell nTPM: 381.6
Samples: 4
Max nTPM: 778.9
Min nTPM: 166.8
RHH5308_R3675
166.8
RHH5216_R3588
778.9
RHH5245_R3617
316.6
RHH5274_R3646
263.9
Non-switched memory B-cell nTPM: 1526.6
Samples: 4
Max nTPM: 2226.6
Min nTPM: 756.4
RHH5309_R3676
926.4
RHH5217_R3589
2226.6
RHH5246_R3618
2196.9
RHH5275_R3647
756.4
Plasmablast nTPM: 197.5
Samples: 4
Max nTPM: 277.0
Min nTPM: 152.3
RHH5312_R3679
190.5
RHH5220_R3592
277.0
RHH5249_R3621
170.0
RHH5278_R3650
152.3
Switched memory B-cell nTPM: 1032.3
Samples: 4
Max nTPM: 1476.4
Min nTPM: 700.0
RHH5311_R3678
743.0
RHH5219_R3591
1476.4
RHH5248_R3620
1209.6
RHH5277_R3649
700.0
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
