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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
463.4
nTPM
Monaco:
169.5
nTPM
Schmiedel:
582.5
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
463.4
HPA sample
nTPM
gdT-cell nTPM: 196.8
Samples: 6
Max nTPM: 223.5
Min nTPM: 169.4
P10809_1007
199.4
P10809_1022
194.8
P10809_1041
169.4
P10809_1060
188.4
P10809_1077
205.3
P10809_1098
223.5
MAIT T-cell nTPM: 298.6
Samples: 6
Max nTPM: 364.1
Min nTPM: 249.3
P10809_1006
249.3
P10809_1024
313.3
P10809_1043
287.5
P10809_1062
291.5
P10809_1083
285.7
P10809_1097
364.1
Memory CD4 T-cell nTPM: 463.4
Samples: 6
Max nTPM: 519.6
Min nTPM: 359.8
P10809_1014
519.6
P10809_1026
460.4
P10809_1045
491.7
P10809_1064
359.8
P10809_1086
431.8
P10809_1113
517.0
Memory CD8 T-cell nTPM: 294.2
Samples: 5
Max nTPM: 365.6
Min nTPM: 225.0
P10809_1012
277.2
P10809_1027
318.5
P10809_1046
284.7
P10809_1065
225.0
P10809_1111
365.6
Naive CD4 T-cell nTPM: 417.3
Samples: 6
Max nTPM: 510.9
Min nTPM: 303.8
P10809_1015
510.9
P10809_1030
465.8
P10809_1049
461.0
P10809_1068
378.2
P10809_1085
303.8
P10809_1112
384.2
Naive CD8 T-cell nTPM: 326.6
Samples: 6
Max nTPM: 474.3
Min nTPM: 244.7
P10809_1016
474.3
P10809_1031
326.5
P10809_1050
319.6
P10809_1069
254.8
P10809_1087
244.7
P10809_1110
339.4
T-reg nTPM: 363.6
Samples: 6
Max nTPM: 486.5
Min nTPM: 274.5
P10809_1018
322.3
P10809_1037
486.5
P10809_1056
274.5
P10809_1075
390.1
P10809_1094
314.2
P10809_1106
393.7
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
169.5
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 135.8
Samples: 4
Max nTPM: 184.8
Min nTPM: 93.6
RHH5202_R3573
93.6
RHH5230_R3602
133.0
RHH5259_R3631
184.8
RHH5288_R3660
131.9
Effector memory CD8 T-cell nTPM: 72.9
Samples: 4
Max nTPM: 103.7
Min nTPM: 38.9
RHH5203_R3574
74.3
RHH5231_R3603
74.6
RHH5260_R3632
103.7
RHH5289_R3661
38.9
MAIT T-cell nTPM: 81.5
Samples: 4
Max nTPM: 86.6
Min nTPM: 71.6
RHH5233_R3605
85.1
RHH5205_R3576
82.8
RHH5262_R3634
86.6
RHH5297_R3663
71.6
Memory CD4 T-cell TFH nTPM: 128.8
Samples: 4
Max nTPM: 192.8
Min nTPM: 92.9
RHH5300_R3666
106.0
RHH5236_R3608
192.8
RHH5265_R3637
92.9
RHH5208_R3579
123.5
Memory CD4 T-cell Th1 nTPM: 169.5
Samples: 4
Max nTPM: 269.7
Min nTPM: 80.1
RHH5210_R3581
80.1
RHH5302_R3668
176.8
RHH5238_R3610
269.7
RHH5267_R3639
151.4
Memory CD4 T-cell Th1/Th17 nTPM: 137.5
Samples: 4
Max nTPM: 175.7
Min nTPM: 108.0
RHH5303_R3669
120.0
RHH5211_R3582
108.0
RHH5239_R3611
146.2
RHH5268_R3640
175.7
Memory CD4 T-cell Th17 nTPM: 130.1
Samples: 4
Max nTPM: 180.0
Min nTPM: 98.8
RHH5304_R3670
140.8
RHH5212_R3583
98.8
RHH5240_R3612
180.0
RHH5269_R3641
100.6
Memory CD4 T-cell Th2 nTPM: 144.0
Samples: 4
Max nTPM: 190.0
Min nTPM: 126.0
RHH5305_R3671
190.0
RHH5213_R3584
126.0
RHH5241_R3613
126.8
RHH5270_R3642
133.1
Naive CD4 T-cell nTPM: 121.0
Samples: 4
Max nTPM: 146.9
Min nTPM: 91.5
RHH5306_R3672
141.7
RHH5214_R3585
146.9
RHH5242_R3614
103.8
RHH5271_R3643
91.5
Naive CD8 T-cell nTPM: 122.1
Samples: 4
Max nTPM: 166.7
Min nTPM: 100.6
RHH5201_R3572
106.1
RHH5229_R3601
166.7
RHH5258_R3630
100.6
RHH5287_R3659
114.8
Non-Vd2 gdTCR nTPM: 75.7
Samples: 4
Max nTPM: 90.8
Min nTPM: 64.6
RHH5235_R3607
90.8
RHH5264_R3636
64.6
RHH5207_R3578
74.5
RHH5299_R3665
72.9
T-reg nTPM: 105.9
Samples: 4
Max nTPM: 118.3
Min nTPM: 94.3
RHH5301_R3667
118.3
RHH5237_R3609
94.3
RHH5266_R3638
115.4
RHH5209_R3580
95.6
Terminal effector memory CD4 T-cell nTPM: 77.4
Samples: 2
Max nTPM: 82.7
Min nTPM: 72.1
RHH5243_R3615
82.7
RHH5272_R3644
72.1
Terminal effector memory CD8 T-cell nTPM: 87.7
Samples: 4
Max nTPM: 131.8
Min nTPM: 54.9
RHH5232_R3604
54.9
RHH5204_R3575
131.8
RHH5261_R3633
101.5
RHH5296_R3662
62.4
Vd2 gdTCR nTPM: 117.2
Samples: 4
Max nTPM: 136.9
Min nTPM: 100.4
RHH5234_R3606
100.4
RHH5206_R3577
136.9
RHH5263_R3635
116.9
RHH5298_R3664
114.5
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
