MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:52.0 nTPM
HPA Brain:28.8 nTPM
GTEx:52.0 nTPM
FANTOM5:67.5 Scaled Tags Per Million
Pig:37.0 nTPM
Mouse:72.0 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 28.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 25.5
1870 Female, age 42, unknown 31.3
2411 Female, age 72, unknown 30.7
2019 Male, age 18, unknown 27.2
1827 Male, age 72, unknown 26.3
2666 Male, age 74, left hemisphere 25.4
2219 Male, age 76, both hemispheres 25.2
1833 Male, age 53, unknown 24.5
1830 Male, age 51, unknown 24.2
2586 Male, age 75, left hemisphere 21.2
2828 Female, age 72, unknown 19.6
Dorsal raphe nucleus
nTPM: 27.7
2750 Male, age 76, both hemispheres 30.7
1828 Male, age 53, unknown 28.4
2298 Female, age 72, unknown 28.2
2047 Male, age 72, unknown 26.8
2016 Female, age 72, unknown 24.5
Inferior colliculus
nTPM: 28.3
2097 Female, age 72, unknown 31.4
1848 Female, age 42, unknown 28.3
1890 Male, age 53, unknown 27.6
2849 Male, age 72, unknown 25.8
Median raphe nucleus
nTPM: 28.5
2220 Male, age 76, midline 28.5
Periaquaductal grey, anterior
nTPM: 25.6
1947 Male, age 18, unknown 27.2
2502 Female, age 75, unknown 26.3
1795 Male, age 51, unknown 23.5
Periaquaductal grey, dorsal
nTPM: 25.0
1840 Male, age 53, unknown 26.6
2850 Male, age 76, both hemispheres 26.0
1831 Male, age 72, unknown 24.0
2464 Female, age 72, unknown 23.6
Periaquaductal grey, lateral
nTPM: 26.2
2272 Male, age 74, both hemispheres 28.4
2053 Male, age 18, unknown 26.6
2140 Male, age 76, both hemispheres 23.7
Pretectal area
nTPM: 27.0
2007 Male, age 72, unknown 30.0
1816 Male, age 51, unknown 29.6
1815 Male, age 53, unknown 29.1
1817 Female, age 42, unknown 28.5
2224 Female, age 72, unknown 27.6
1944 Female, age 72, unknown 27.0
2273 Male, age 74, both hemispheres 26.8
2825 Male, age 18, unknown 26.3
2667 Female, age 75, unknown 25.7
2316 Male, age 76, right hemisphere 24.4
2407 Male, age 75, both hemispheres 21.7
Red nucleus
nTPM: 26.8
1821 Female, age 72, unknown 33.7
2503 Female, age 72, unknown 30.4
2725 Female, age 75, unknown 29.7
2823 Male, age 76, right hemisphere 27.2
1904 Male, age 53, unknown 27.0
1954 Female, age 42, unknown 26.6
2769 Male, age 72, unknown 25.8
1865 Male, age 51, unknown 25.7
2227 Male, age 72, unknown 25.6
2588 Male, age 74, left hemisphere 24.1
2785 Male, age 18, unknown 23.7
2584 Male, age 75, left hemisphere 21.6
Substantia nigra
nTPM: 28.8
1889 Female, age 72, unknown 33.4
2241 Male, age 72, unknown 33.1
1851 Male, age 51, unknown 32.6
1941 Male, age 53, unknown 29.7
2409 Female, age 72, unknown 29.0
1916 Female, age 42, unknown 28.9
2665 Male, age 74, both hemispheres 28.8
2699 Male, age 18, unknown 27.5
2590 Female, age 75, unknown 24.1
2583 Male, age 75, right hemisphere 20.7
Superior colliculus
nTPM: 26.5
2587 Male, age 74, left hemisphere 33.4
2668 Female, age 75, unknown 28.3
1913 Female, age 42, unknown 27.9
1895 Male, age 76, right hemisphere 27.6
1839 Male, age 51, unknown 27.0
2087 Female, age 72, unknown 26.9
2261 Male, age 18, unknown 26.8
1995 Male, age 72, unknown 24.5
1796 Male, age 53, unknown 23.3
2664 Male, age 75, both hemispheres 19.0
Ventral tegmental area
nTPM: 27.3
2410 Female, age 72, unknown 31.3
2218 Male, age 76, both hemispheres 28.5
1915 Female, age 42, unknown 27.5
2223 Female, age 72, unknown 26.2
2021 Male, age 53, unknown 25.8
1942 Male, age 51, unknown 24.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 52.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 52.0
Samples: 139

Max nTPM: 100.2
Min nTPM: 30.6
Std nTPM: 9.9
Median nTPM: 50.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 100.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 87.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 76.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 75.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 73.1
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 71.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 69.9
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 65.4
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 65.2
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 65.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 64.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 67.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 67.5
FF:10158-103A5 76 years, female 67.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 37.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 31.6
Samples: 4

Max nTPM: 37.2
Min nTPM: 24.4
Sample A Female 24.4
Sample B Female 31.7
Sample C Male 33.2
Sample D Male 37.2
Midbrain
nTPM: 35.0
Samples: 4

Max nTPM: 43.2
Min nTPM: 22.5
Sample A Female 22.5
Sample B Female 35.9
Sample C Male 38.5
Sample D Male 43.2
Periaqueductal gray
nTPM: 37.0
Samples: 3

Max nTPM: 39.6
Min nTPM: 32.4
Sample B Female 38.9
Sample C Male 32.4
Sample D Male 39.6
Superior colliculi
nTPM: 32.0
Samples: 4

Max nTPM: 39.1
Min nTPM: 25.7
Sample A Female 25.7
Sample B Female 26.8
Sample C Male 39.1
Sample D Male 36.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 72.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 71.9
Samples: 4

Max nTPM: 78.0
Min nTPM: 65.1
Sample A Male 78.0
Sample B Male 72.9
Sample C Female 65.1
Sample D Female 71.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
68076991 Antisense, RP_040929_01_C04, Mouse strain C57BL/6J (56 days, male) 0.0

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