HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:42.2 nTPM
HPA Brain:27.2 nTPM
GTEx:42.2 nTPM
FANTOM5:100.8 Scaled Tags Per Million
Pig:45.7 nTPM
Mouse:75.0 nTPM
Allen mouse:0.6 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA035826
Glial cells Low
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 27.2
Sample id Sample description nTPM
Hippocampus
nTPM: 26.3
1898 Male, age 80, left hemisphere 30.2
2621 Female, age 67, right hemisphere 29.8
2529 Female, age 94, left hemisphere 26.9
1911 Female, age 85, right hemisphere 25.0
1855 Male, age 76, left hemisphere 24.5
2148 Female, age 91, left hemisphere 21.4
Dentate gyrus
nTPM: 24.9
2010 Male, age 76, both hemispheres 27.9
2530 Female, age 94, left hemisphere 26.5
2246 Female, age 85, both hemispheres 25.8
1927 Female, age 91, both hemispheres 25.4
2528 Male, age 74, both hemispheres 23.5
2531 Female, age 67, both hemispheres 20.2
Entorhinal gyrus
nTPM: 22.3
2764 Male, age 80, right hemisphere 24.1
2117 Female, age 91, right hemisphere 23.9
2686 Male, age 75, right hemisphere 22.4
1938 Female, age 85, left hemisphere 22.3
1787 Male, age 76, left hemisphere 21.5
2613 Female, age 94, left hemisphere 19.9
Hippocampus, CA1
nTPM: 23.8
2749 Male, age 80, left hemisphere 26.5
1873 Female, age 85, both hemispheres 26.0
2527 Male, age 74, both hemispheres 24.6
2045 Male, age 76, both hemispheres 23.0
2082 Female, age 91, right hemisphere 19.2
Hippocampus, CA2
nTPM: 25.7
1963 Male, age 80, left hemisphere 29.9
2249 Male, age 74, both hemispheres 29.5
1892 Male, age 76, both hemispheres 28.5
2437 Female, age 94, left hemisphere 23.0
1940 Female, age 85, left hemisphere 21.9
2113 Female, age 91, right hemisphere 21.7
Hippocampus, CA3
nTPM: 24.0
2436 Male, age 74, both hemispheres 29.6
1867 Male, age 76, both hemispheres 28.4
1891 Female, age 85, both hemispheres 24.8
2137 Male, age 80, left hemisphere 22.2
2861 Female, age 67, both hemispheres 19.8
2620 Female, age 94, left hemisphere 19.0
Parahippocampal cortex
nTPM: 23.9
2018 Male, age 76, both hemispheres 28.9
1850 Male, age 80, both hemispheres 26.5
2245 Female, age 91, both hemispheres 24.6
1990 Female, age 91, right hemisphere 24.5
2250 Female, age 67, right hemisphere 23.5
2693 Female, age 94, both hemispheres 23.4
2692 Male, age 74, both hemispheres 22.8
2532 Female, age 72, left hemisphere 22.6
1933 Female, age 85, both hemispheres 22.3
2622 Female, age 67, right hemisphere 20.2
Perirhinal gyrus
nTPM: 27.2
1794 Male, age 80, right hemisphere 29.0
1841 Female, age 85, right hemisphere 28.9
1847 Female, age 91, left hemisphere 28.0
2848 Male, age 76, right hemisphere 26.2
2521 Female, age 94, right hemisphere 23.6
Subiculum
nTPM: 26.4
2438 Female, age 94, left hemisphere 36.5
1977 Female, age 85, both hemispheres 27.4
1901 Male, age 80, both hemispheres 26.1
2729 Female, age 91, right hemisphere 23.5
2042 Male, age 76, both hemispheres 23.1
2619 Male, age 74, both hemispheres 21.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 42.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 42.2
Samples: 197

Max nTPM: 104.3
Min nTPM: 22.6
Std nTPM: 9.9
Median nTPM: 40.7
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 104.3
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 78.6
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 71.6
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 64.8
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 62.2
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 61.8
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 61.4
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 61.3
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 60.8
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 59.6
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 59.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 100.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 100.8
FF:10169-103B7 60 years, female 117.3
FF:10153-102I9 76 years, female 84.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 45.7
Pig sample Sample description nTPM
Subiculum
nTPM: 43.5
Samples: 4

Max nTPM: 49.9
Min nTPM: 29.7
Sample A Female 29.7
Sample B Female 45.6
Sample C Male 49.9
Sample D Male 48.7
Dorsal hippocampus
nTPM: 39.5
Samples: 4

Max nTPM: 51.8
Min nTPM: 27.7
Sample A Female 27.7
Sample B Female 41.5
Sample C Male 37.1
Sample D Male 51.8
Entorhinal cortex
nTPM: 45.8
Samples: 4

Max nTPM: 56.7
Min nTPM: 40.1
Sample A Female 44.3
Sample B Female 40.1
Sample C Male 41.9
Sample D Male 56.7
Ventral hippocampus
nTPM: 43.1
Samples: 4

Max nTPM: 53.0
Min nTPM: 32.4
Sample A Female 45.8
Sample B Female 53.0
Sample C Male 32.4
Sample D Male 41.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 75.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 74.3
Samples: 4

Max nTPM: 79.4
Min nTPM: 64.9
Sample A Male 64.9
Sample B Male 79.4
Sample C Female 78.0
Sample D Female 75.0
Hippocampal formation
nTPM: 75.0
Samples: 4

Max nTPM: 89.9
Min nTPM: 67.7
Sample A Male 89.9
Sample B Male 67.7
Sample C Female 73.3
Sample D Female 69.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.6
68076991 Antisense, RP_040929_01_C04, Mouse strain C57BL/6J (56 days, male) 0.6

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