MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:74.8 nTPM
HPA Brain:79.0 nTPM
GTEx:74.8 nTPM
FANTOM5:45.6 Scaled Tags Per Million
Pig:69.6 nTPM
Mouse:125.6 nTPM
Allen mouse:3.6 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 79.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 68.1
2586 Male, age 75, left hemisphere 78.1
2411 Female, age 72, unknown 72.9
1827 Male, age 72, unknown 71.8
2828 Female, age 72, unknown 71.3
2219 Male, age 76, both hemispheres 71.2
2019 Male, age 18, unknown 67.4
1870 Female, age 42, unknown 64.5
1833 Male, age 53, unknown 63.5
1830 Male, age 51, unknown 63.2
2666 Male, age 74, left hemisphere 56.7
Dorsal raphe nucleus
nTPM: 73.8
2298 Female, age 72, unknown 88.7
2047 Male, age 72, unknown 75.0
2750 Male, age 76, both hemispheres 73.2
1828 Male, age 53, unknown 70.7
2016 Female, age 72, unknown 61.4
Inferior colliculus
nTPM: 60.5
2097 Female, age 72, unknown 64.6
1848 Female, age 42, unknown 60.0
1890 Male, age 53, unknown 59.3
2849 Male, age 72, unknown 58.2
Median raphe nucleus
nTPM: 76.8
2220 Male, age 76, midline 76.8
Periaquaductal grey, anterior
nTPM: 73.8
1947 Male, age 18, unknown 75.8
2502 Female, age 75, unknown 73.2
1795 Male, age 51, unknown 72.3
Periaquaductal grey, dorsal
nTPM: 61.9
1840 Male, age 53, unknown 65.8
2850 Male, age 76, both hemispheres 63.0
1831 Male, age 72, unknown 62.2
2464 Female, age 72, unknown 56.5
Periaquaductal grey, lateral
nTPM: 64.9
2272 Male, age 74, both hemispheres 74.7
2140 Male, age 76, both hemispheres 61.0
2053 Male, age 18, unknown 59.0
Pretectal area
nTPM: 70.5
2667 Female, age 75, unknown 77.7
2007 Male, age 72, unknown 77.5
1944 Female, age 72, unknown 77.4
1816 Male, age 51, unknown 76.6
2273 Male, age 74, both hemispheres 74.0
2224 Female, age 72, unknown 72.6
1817 Female, age 42, unknown 72.3
1815 Male, age 53, unknown 69.7
2407 Male, age 75, both hemispheres 63.0
2825 Male, age 18, unknown 60.2
2316 Male, age 76, right hemisphere 54.5
Red nucleus
nTPM: 65.9
1904 Male, age 53, unknown 70.7
2785 Male, age 18, unknown 70.4
1821 Female, age 72, unknown 70.0
2588 Male, age 74, left hemisphere 69.5
2503 Female, age 72, unknown 66.5
1865 Male, age 51, unknown 66.3
2227 Male, age 72, unknown 65.7
2769 Male, age 72, unknown 65.4
2725 Female, age 75, unknown 65.2
2584 Male, age 75, left hemisphere 62.4
1954 Female, age 42, unknown 62.3
2823 Male, age 76, right hemisphere 56.0
Substantia nigra
nTPM: 79.0
1916 Female, age 42, unknown 111.8
1851 Male, age 51, unknown 95.3
2699 Male, age 18, unknown 81.5
1941 Male, age 53, unknown 76.3
1889 Female, age 72, unknown 73.2
2241 Male, age 72, unknown 73.1
2409 Female, age 72, unknown 72.3
2583 Male, age 75, right hemisphere 69.7
2590 Female, age 75, unknown 69.3
2665 Male, age 74, both hemispheres 67.3
Superior colliculus
nTPM: 67.3
1796 Male, age 53, unknown 77.6
2261 Male, age 18, unknown 74.7
2087 Female, age 72, unknown 71.2
2668 Female, age 75, unknown 69.2
2587 Male, age 74, left hemisphere 67.2
1913 Female, age 42, unknown 66.2
2664 Male, age 75, both hemispheres 64.2
1995 Male, age 72, unknown 62.0
1895 Male, age 76, right hemisphere 60.8
1839 Male, age 51, unknown 60.3
Ventral tegmental area
nTPM: 78.4
2410 Female, age 72, unknown 93.3
1915 Female, age 42, unknown 85.5
2218 Male, age 76, both hemispheres 84.9
1942 Male, age 51, unknown 70.2
2021 Male, age 53, unknown 68.1
2223 Female, age 72, unknown 68.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 74.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 74.8
Samples: 139

Max nTPM: 154.7
Min nTPM: 38.1
Std nTPM: 18.9
Median nTPM: 71.7
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 154.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 146.4
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 123.9
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 122.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 112.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 111.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 106.4
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 104.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 103.2
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 103.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 102.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 45.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 45.6
FF:10158-103A5 76 years, female 45.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 69.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 69.6
Samples: 4

Max nTPM: 80.5
Min nTPM: 57.6
Sample A Female 79.7
Sample B Female 57.6
Sample C Male 80.5
Sample D Male 60.7
Midbrain
nTPM: 69.5
Samples: 4

Max nTPM: 80.1
Min nTPM: 60.1
Sample A Female 80.1
Sample B Female 61.5
Sample C Male 76.3
Sample D Male 60.1
Periaqueductal gray
nTPM: 55.5
Samples: 3

Max nTPM: 62.8
Min nTPM: 48.0
Sample B Female 55.6
Sample C Male 62.8
Sample D Male 48.0
Superior colliculi
nTPM: 69.5
Samples: 4

Max nTPM: 78.0
Min nTPM: 59.5
Sample A Female 72.9
Sample B Female 59.5
Sample C Male 78.0
Sample D Male 67.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 125.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 125.6
Samples: 4

Max nTPM: 129.8
Min nTPM: 122.2
Sample A Male 127.6
Sample B Male 122.2
Sample C Female 122.9
Sample D Female 129.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.6
67978711 Antisense, RP_040923_01_F07, Mouse strain C57BL/6J (56 days, male) 3.6

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