MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:136.5 nTPM
HPA Brain:84.6 nTPM
GTEx:136.5 nTPM
FANTOM5:104.7 Scaled Tags Per Million
Pig:41.8 nTPM
Mouse:13.3 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 84.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 66.6
2828 Female, age 72, unknown 84.6
2019 Male, age 18, unknown 79.6
2411 Female, age 72, unknown 75.9
2586 Male, age 75, left hemisphere 71.3
1827 Male, age 72, unknown 69.1
2219 Male, age 76, both hemispheres 62.6
1870 Female, age 42, unknown 59.8
1833 Male, age 53, unknown 58.4
1830 Male, age 51, unknown 55.4
2666 Male, age 74, left hemisphere 48.8
Dorsal raphe nucleus
nTPM: 75.8
2750 Male, age 76, both hemispheres 89.1
2047 Male, age 72, unknown 78.0
1828 Male, age 53, unknown 77.9
2298 Female, age 72, unknown 75.7
2016 Female, age 72, unknown 58.3
Inferior colliculus
nTPM: 62.1
2097 Female, age 72, unknown 67.3
1848 Female, age 42, unknown 64.6
1890 Male, age 53, unknown 59.5
2849 Male, age 72, unknown 57.1
Median raphe nucleus
nTPM: 84.6
2220 Male, age 76, midline 84.6
Periaquaductal grey, anterior
nTPM: 61.9
2502 Female, age 75, unknown 66.2
1795 Male, age 51, unknown 63.4
1947 Male, age 18, unknown 56.2
Periaquaductal grey, dorsal
nTPM: 59.9
2850 Male, age 76, both hemispheres 69.3
1831 Male, age 72, unknown 57.8
2464 Female, age 72, unknown 56.8
1840 Male, age 53, unknown 55.8
Periaquaductal grey, lateral
nTPM: 60.3
2140 Male, age 76, both hemispheres 64.7
2053 Male, age 18, unknown 59.2
2272 Male, age 74, both hemispheres 57.0
Pretectal area
nTPM: 70.8
2007 Male, age 72, unknown 90.1
1817 Female, age 42, unknown 86.4
1816 Male, age 51, unknown 85.6
1944 Female, age 72, unknown 80.6
2667 Female, age 75, unknown 75.6
1815 Male, age 53, unknown 72.0
2273 Male, age 74, both hemispheres 65.0
2224 Female, age 72, unknown 59.8
2316 Male, age 76, right hemisphere 58.3
2825 Male, age 18, unknown 57.9
2407 Male, age 75, both hemispheres 47.2
Red nucleus
nTPM: 73.9
2503 Female, age 72, unknown 93.4
2823 Male, age 76, right hemisphere 88.8
1821 Female, age 72, unknown 86.4
2725 Female, age 75, unknown 77.1
2785 Male, age 18, unknown 75.4
2588 Male, age 74, left hemisphere 75.3
2227 Male, age 72, unknown 74.5
2769 Male, age 72, unknown 73.4
1904 Male, age 53, unknown 69.1
1954 Female, age 42, unknown 66.7
1865 Male, age 51, unknown 60.0
2584 Male, age 75, left hemisphere 47.0
Substantia nigra
nTPM: 70.7
1916 Female, age 42, unknown 100.0
1941 Male, age 53, unknown 87.9
1851 Male, age 51, unknown 87.5
2699 Male, age 18, unknown 73.6
1889 Female, age 72, unknown 69.2
2590 Female, age 75, unknown 65.8
2409 Female, age 72, unknown 63.4
2665 Male, age 74, both hemispheres 60.9
2583 Male, age 75, right hemisphere 52.4
2241 Male, age 72, unknown 46.8
Superior colliculus
nTPM: 61.7
2087 Female, age 72, unknown 77.4
1995 Male, age 72, unknown 69.3
1796 Male, age 53, unknown 64.7
2587 Male, age 74, left hemisphere 61.7
1913 Female, age 42, unknown 61.5
2261 Male, age 18, unknown 61.5
1839 Male, age 51, unknown 57.4
1895 Male, age 76, right hemisphere 57.2
2664 Male, age 75, both hemispheres 54.4
2668 Female, age 75, unknown 52.1
Ventral tegmental area
nTPM: 74.1
2410 Female, age 72, unknown 84.3
2218 Male, age 76, both hemispheres 78.9
1915 Female, age 42, unknown 78.3
1942 Male, age 51, unknown 70.6
2021 Male, age 53, unknown 67.4
2223 Female, age 72, unknown 64.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 136.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 136.5
Samples: 139

Max nTPM: 381.3
Min nTPM: 42.9
Std nTPM: 52.4
Median nTPM: 133.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 381.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 321.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 255.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 248.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 248.4
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 236.3
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 232.8
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 232.2
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 224.4
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 222.0
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 202.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 104.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 104.7
FF:10158-103A5 76 years, female 104.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 41.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 41.1
Samples: 4

Max nTPM: 49.8
Min nTPM: 29.8
Sample A Female 49.8
Sample B Female 45.9
Sample C Male 38.8
Sample D Male 29.8
Midbrain
nTPM: 37.4
Samples: 4

Max nTPM: 47.2
Min nTPM: 25.5
Sample A Female 45.9
Sample B Female 47.2
Sample C Male 31.1
Sample D Male 25.5
Periaqueductal gray
nTPM: 37.1
Samples: 3

Max nTPM: 42.7
Min nTPM: 30.0
Sample B Female 38.5
Sample C Male 42.7
Sample D Male 30.0
Superior colliculi
nTPM: 41.8
Samples: 4

Max nTPM: 53.1
Min nTPM: 29.2
Sample A Female 53.0
Sample B Female 53.1
Sample C Male 29.2
Sample D Male 32.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 13.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.3
Samples: 4

Max nTPM: 15.1
Min nTPM: 11.4
Sample A Male 15.1
Sample B Male 12.4
Sample C Female 11.4
Sample D Female 14.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
68301993 Antisense, RP_041130_02_B12, Mouse strain C57BL/6J (56 days, male) 0.0

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