MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:84.7 nTPM
HPA Brain:67.3 nTPM
GTEx:84.7 nTPM
FANTOM5:170.5 Scaled Tags Per Million
Pig:97.9 nTPM
Mouse:117.5 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 67.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 57.5
1870 Female, age 42, unknown 75.1
1833 Male, age 53, unknown 67.8
2666 Male, age 74, left hemisphere 60.9
1830 Male, age 51, unknown 60.3
2411 Female, age 72, unknown 60.1
2586 Male, age 75, left hemisphere 52.0
1827 Male, age 72, unknown 51.6
2019 Male, age 18, unknown 51.3
2219 Male, age 76, both hemispheres 50.4
2828 Female, age 72, unknown 45.2
Dorsal raphe nucleus
nTPM: 62.4
2298 Female, age 72, unknown 65.3
2016 Female, age 72, unknown 62.6
2047 Male, age 72, unknown 61.7
2750 Male, age 76, both hemispheres 61.3
1828 Male, age 53, unknown 61.0
Inferior colliculus
nTPM: 58.8
2097 Female, age 72, unknown 64.0
2849 Male, age 72, unknown 59.0
1890 Male, age 53, unknown 56.2
1848 Female, age 42, unknown 55.9
Median raphe nucleus
nTPM: 49.3
2220 Male, age 76, midline 49.3
Periaquaductal grey, anterior
nTPM: 56.9
1947 Male, age 18, unknown 66.5
2502 Female, age 75, unknown 56.7
1795 Male, age 51, unknown 47.5
Periaquaductal grey, dorsal
nTPM: 56.2
2850 Male, age 76, both hemispheres 67.1
1831 Male, age 72, unknown 55.7
2464 Female, age 72, unknown 52.7
1840 Male, age 53, unknown 49.2
Periaquaductal grey, lateral
nTPM: 51.8
2053 Male, age 18, unknown 59.0
2140 Male, age 76, both hemispheres 52.1
2272 Male, age 74, both hemispheres 44.4
Pretectal area
nTPM: 53.9
1815 Male, age 53, unknown 62.2
2224 Female, age 72, unknown 61.7
1817 Female, age 42, unknown 58.8
2825 Male, age 18, unknown 58.0
2273 Male, age 74, both hemispheres 56.8
2667 Female, age 75, unknown 54.9
2316 Male, age 76, right hemisphere 53.2
1816 Male, age 51, unknown 49.4
1944 Female, age 72, unknown 47.7
2007 Male, age 72, unknown 47.0
2407 Male, age 75, both hemispheres 43.7
Red nucleus
nTPM: 67.3
1821 Female, age 72, unknown 89.8
1954 Female, age 42, unknown 81.1
1904 Male, age 53, unknown 76.3
1865 Male, age 51, unknown 75.6
2503 Female, age 72, unknown 72.5
2769 Male, age 72, unknown 67.8
2725 Female, age 75, unknown 65.2
2227 Male, age 72, unknown 65.0
2588 Male, age 74, left hemisphere 59.5
2823 Male, age 76, right hemisphere 57.9
2785 Male, age 18, unknown 52.9
2584 Male, age 75, left hemisphere 43.7
Substantia nigra
nTPM: 61.5
2699 Male, age 18, unknown 71.8
1889 Female, age 72, unknown 68.8
2241 Male, age 72, unknown 66.7
1851 Male, age 51, unknown 63.5
2409 Female, age 72, unknown 62.8
1916 Female, age 42, unknown 62.7
1941 Male, age 53, unknown 60.7
2665 Male, age 74, both hemispheres 59.8
2583 Male, age 75, right hemisphere 50.2
2590 Female, age 75, unknown 48.1
Superior colliculus
nTPM: 56.1
2668 Female, age 75, unknown 69.3
1913 Female, age 42, unknown 66.6
1995 Male, age 72, unknown 63.8
2587 Male, age 74, left hemisphere 60.9
1839 Male, age 51, unknown 59.5
1895 Male, age 76, right hemisphere 54.0
2664 Male, age 75, both hemispheres 48.8
2087 Female, age 72, unknown 47.3
1796 Male, age 53, unknown 46.4
2261 Male, age 18, unknown 44.7
Ventral tegmental area
nTPM: 61.0
2223 Female, age 72, unknown 66.5
2410 Female, age 72, unknown 65.2
1915 Female, age 42, unknown 61.6
2218 Male, age 76, both hemispheres 59.4
1942 Male, age 51, unknown 57.9
2021 Male, age 53, unknown 55.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 84.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 84.7
Samples: 139

Max nTPM: 168.7
Min nTPM: 48.5
Std nTPM: 18.0
Median nTPM: 79.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 168.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 131.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 124.6
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 116.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 116.6
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 116.3
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 115.8
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 114.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 114.5
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 113.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 113.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 170.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 170.5
FF:10158-103A5 76 years, female 170.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 97.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 79.9
Samples: 4

Max nTPM: 95.6
Min nTPM: 69.4
Sample A Female 95.6
Sample B Female 69.4
Sample C Male 75.4
Sample D Male 79.0
Midbrain
nTPM: 97.9
Samples: 4

Max nTPM: 121.3
Min nTPM: 79.9
Sample A Female 121.3
Sample B Female 89.6
Sample C Male 100.9
Sample D Male 79.9
Periaqueductal gray
nTPM: 71.4
Samples: 3

Max nTPM: 76.5
Min nTPM: 66.2
Sample B Female 71.5
Sample C Male 76.5
Sample D Male 66.2
Superior colliculi
nTPM: 93.2
Samples: 4

Max nTPM: 111.9
Min nTPM: 67.4
Sample A Female 106.4
Sample B Female 67.4
Sample C Male 111.9
Sample D Male 86.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 117.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 117.5
Samples: 4

Max nTPM: 120.4
Min nTPM: 114.8
Sample A Male 120.4
Sample B Male 119.0
Sample C Female 115.6
Sample D Female 114.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
71763628 Antisense, RP_050921_02_D03, Mouse strain C57BL/6J (56 days, male) 0.0

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