MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:7.2 nTPM
HPA Brain:34.4 nTPM
GTEx:7.2 nTPM
FANTOM5:36.7 Scaled Tags Per Million
Pig:17.1 nTPM
Mouse:6.2 nTPM
Allen mouse:5.5 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 34.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 30.2
2219 Male, age 76, both hemispheres 34.9
1830 Male, age 51, unknown 33.6
2019 Male, age 18, unknown 33.0
1833 Male, age 53, unknown 32.4
2411 Female, age 72, unknown 30.2
2586 Male, age 75, left hemisphere 29.3
2828 Female, age 72, unknown 29.3
1870 Female, age 42, unknown 28.4
1827 Male, age 72, unknown 26.2
2666 Male, age 74, left hemisphere 24.8
Dorsal raphe nucleus
nTPM: 24.9
2750 Male, age 76, both hemispheres 31.5
2016 Female, age 72, unknown 27.1
1828 Male, age 53, unknown 23.6
2298 Female, age 72, unknown 22.4
2047 Male, age 72, unknown 19.8
Inferior colliculus
nTPM: 25.8
1848 Female, age 42, unknown 26.2
1890 Male, age 53, unknown 26.2
2849 Male, age 72, unknown 25.6
2097 Female, age 72, unknown 25.0
Median raphe nucleus
nTPM: 22.5
2220 Male, age 76, midline 22.5
Periaquaductal grey, anterior
nTPM: 25.9
2502 Female, age 75, unknown 32.3
1947 Male, age 18, unknown 23.0
1795 Male, age 51, unknown 22.6
Periaquaductal grey, dorsal
nTPM: 24.2
2464 Female, age 72, unknown 26.7
1831 Male, age 72, unknown 26.6
2850 Male, age 76, both hemispheres 21.7
1840 Male, age 53, unknown 21.6
Periaquaductal grey, lateral
nTPM: 24.2
2272 Male, age 74, both hemispheres 26.1
2140 Male, age 76, both hemispheres 23.7
2053 Male, age 18, unknown 22.9
Pretectal area
nTPM: 26.3
1815 Male, age 53, unknown 30.3
2316 Male, age 76, right hemisphere 29.6
2273 Male, age 74, both hemispheres 28.2
2007 Male, age 72, unknown 26.9
1817 Female, age 42, unknown 26.3
1944 Female, age 72, unknown 25.9
2407 Male, age 75, both hemispheres 25.5
2667 Female, age 75, unknown 24.8
1816 Male, age 51, unknown 24.4
2825 Male, age 18, unknown 24.1
2224 Female, age 72, unknown 23.3
Red nucleus
nTPM: 34.4
2503 Female, age 72, unknown 42.5
2227 Male, age 72, unknown 37.7
2785 Male, age 18, unknown 37.7
2823 Male, age 76, right hemisphere 37.5
1904 Male, age 53, unknown 35.9
1865 Male, age 51, unknown 35.5
2769 Male, age 72, unknown 34.7
2588 Male, age 74, left hemisphere 34.3
1954 Female, age 42, unknown 32.2
1821 Female, age 72, unknown 28.9
2725 Female, age 75, unknown 28.1
2584 Male, age 75, left hemisphere 27.7
Substantia nigra
nTPM: 23.6
2583 Male, age 75, right hemisphere 27.8
2409 Female, age 72, unknown 26.2
1889 Female, age 72, unknown 25.4
2699 Male, age 18, unknown 24.9
1851 Male, age 51, unknown 23.4
1941 Male, age 53, unknown 23.1
2590 Female, age 75, unknown 22.9
2241 Male, age 72, unknown 22.4
2665 Male, age 74, both hemispheres 20.4
1916 Female, age 42, unknown 19.4
Superior colliculus
nTPM: 28.3
1913 Female, age 42, unknown 35.2
1995 Male, age 72, unknown 32.9
2668 Female, age 75, unknown 29.4
1895 Male, age 76, right hemisphere 28.4
2087 Female, age 72, unknown 28.0
2261 Male, age 18, unknown 27.8
1839 Male, age 51, unknown 27.7
1796 Male, age 53, unknown 25.8
2587 Male, age 74, left hemisphere 25.3
2664 Male, age 75, both hemispheres 22.7
Ventral tegmental area
nTPM: 25.0
1942 Male, age 51, unknown 26.6
2223 Female, age 72, unknown 26.5
2410 Female, age 72, unknown 25.4
2218 Male, age 76, both hemispheres 25.2
2021 Male, age 53, unknown 24.0
1915 Female, age 42, unknown 22.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 7.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 7.2
Samples: 139

Max nTPM: 15.0
Min nTPM: 3.7
Std nTPM: 1.9
Median nTPM: 6.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 15.0
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 12.4
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 11.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 11.9
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 11.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 11.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 11.5
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 11.0
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 10.9
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 10.4
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 10.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 36.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 36.7
FF:10158-103A5 76 years, female 36.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 17.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 15.5
Samples: 4

Max nTPM: 16.4
Min nTPM: 14.0
Sample A Female 14.0
Sample B Female 15.6
Sample C Male 15.9
Sample D Male 16.4
Midbrain
nTPM: 16.6
Samples: 4

Max nTPM: 17.0
Min nTPM: 15.9
Sample A Female 16.7
Sample B Female 15.9
Sample C Male 17.0
Sample D Male 16.8
Periaqueductal gray
nTPM: 14.9
Samples: 3

Max nTPM: 15.2
Min nTPM: 14.4
Sample B Female 15.2
Sample C Male 14.4
Sample D Male 15.2
Superior colliculi
nTPM: 17.1
Samples: 4

Max nTPM: 18.4
Min nTPM: 15.0
Sample A Female 15.0
Sample B Female 18.4
Sample C Male 17.2
Sample D Male 17.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 6.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.3
Samples: 4

Max nTPM: 6.8
Min nTPM: 5.9
Sample A Male 6.1
Sample B Male 6.8
Sample C Female 6.2
Sample D Female 5.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.5
71380501 Antisense, RP_050414_02_A02, Mouse strain C57BL/6J (56 days, male) 5.5

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