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USP50
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  • USP50
PROTEIN SUMMARY SECTION OVERVIEW GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

USP50
Synonyms
Gene descriptioni

Full gene name according to HGNC.

Ubiquitin specific peptidase 50
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Enzymes
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at transcript level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 15
Cytoband q21.2
Chromosome location (bp) 50494018 - 50546708
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

2
Ensembl ENSG00000170236 (version 109)
Entrez gene 373509
HGNC HGNC:20079
UniProt Q70EL3 (UniProt - Evidence at transcript level)
neXtProt NX_Q70EL3
GeneCards USP50
Antibodypedia USP50 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Has no peptidase activity.... show less
Gene summary (Entrez)i

Useful information about the gene from Entrez

Enables ubiquitin-like protein-specific protease activity. Acts upstream of or within several processes, including nuclear speck organization; positive regulation of NLRP3 inflammasome complex assembly; and positive regulation of macromolecule metabolic process. Predicted to be active in several cellular components, including dendritic spine; midbody; and postsynaptic density. Predicted to be extrinsic component of endosome membrane and extrinsic component of plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The ENSP identifier links to the Ensembl website protein summary, while the ENST identifier links to the Ensembl website transcript summary for the selected splice variant. The data in the UniProt column can be expanded to show links to all matching UniProt identifiers for this protein.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The Gene Ontology terms assigned to this protein are listed if expanding the Gene ontology column. The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide (according to a majority of the signal peptide predictors SPOCTOPUS, SignalP 4.0, and Phobius) and the number of predicted transmembrane region(s) (according to MDM) are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
USP50-203
ENSP00000434676
ENST00000532404
Q70EL3
[Direct mapping] Inactive ubiquitin carboxyl-terminal hydrolase 50
Show all
Enzymes
   Peptidases
   Cysteine-type peptidases
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at transcript level
Show all
GO:0004843 [cysteine-type deubiquitinase activity]
GO:0005829 [cytosol]
GO:0006511 [ubiquitin-dependent protein catabolic process]
GO:0007032 [endosome organization]
GO:0007265 [Ras protein signal transduction]
GO:0014069 [postsynaptic density]
GO:0016579 [protein deubiquitination]
GO:0019783 [ubiquitin-like protein peptidase activity]
GO:0019897 [extrinsic component of plasma membrane]
GO:0030496 [midbody]
GO:0031313 [extrinsic component of endosome membrane]
GO:0032731 [positive regulation of interleukin-1 beta production]
GO:0032741 [positive regulation of interleukin-18 production]
GO:0035063 [nuclear speck organization]
GO:0043197 [dendritic spine]
GO:0070536 [protein K63-linked deubiquitination]
GO:0071108 [protein K48-linked deubiquitination]
GO:1900227 [positive regulation of NLRP3 inflammasome complex assembly]
GO:2001056 [positive regulation of cysteine-type endopeptidase activity]
Show all
334 aa
38.4 kDa
No 0
USP50-207
ENSP00000483490
ENST00000616326
A0A087X0L6
[Direct mapping] Inactive ubiquitin carboxyl-terminal hydrolase 50
Show all
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Show all
GO:0004843 [cysteine-type deubiquitinase activity]
GO:0006511 [ubiquitin-dependent protein catabolic process]
GO:0016579 [protein deubiquitination]
Show all
343 aa
39.4 kDa
No 0

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