MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:63.9 nTPM
HPA Brain:84.9 nTPM
GTEx:63.9 nTPM
FANTOM5:119.6 Scaled Tags Per Million
Pig:61.9 nTPM
Mouse:5.6 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 84.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 76.1
2828 Female, age 72, unknown 103.6
2666 Male, age 74, left hemisphere 91.0
2586 Male, age 75, left hemisphere 89.6
1833 Male, age 53, unknown 75.7
1830 Male, age 51, unknown 73.3
1827 Male, age 72, unknown 71.6
1870 Female, age 42, unknown 69.6
2411 Female, age 72, unknown 68.4
2019 Male, age 18, unknown 63.8
2219 Male, age 76, both hemispheres 54.7
Dorsal raphe nucleus
nTPM: 75.1
2016 Female, age 72, unknown 91.5
2298 Female, age 72, unknown 72.5
1828 Male, age 53, unknown 71.6
2750 Male, age 76, both hemispheres 71.6
2047 Male, age 72, unknown 68.4
Inferior colliculus
nTPM: 64.2
1848 Female, age 42, unknown 72.4
2849 Male, age 72, unknown 66.7
1890 Male, age 53, unknown 61.6
2097 Female, age 72, unknown 56.3
Median raphe nucleus
nTPM: 56.3
2220 Male, age 76, midline 56.3
Periaquaductal grey, anterior
nTPM: 74.8
2502 Female, age 75, unknown 87.2
1795 Male, age 51, unknown 74.3
1947 Male, age 18, unknown 62.8
Periaquaductal grey, dorsal
nTPM: 65.2
1831 Male, age 72, unknown 71.6
2464 Female, age 72, unknown 64.0
1840 Male, age 53, unknown 62.8
2850 Male, age 76, both hemispheres 62.4
Periaquaductal grey, lateral
nTPM: 72.3
2053 Male, age 18, unknown 78.7
2140 Male, age 76, both hemispheres 70.8
2272 Male, age 74, both hemispheres 67.3
Pretectal area
nTPM: 63.9
2316 Male, age 76, right hemisphere 78.0
2825 Male, age 18, unknown 75.9
2224 Female, age 72, unknown 69.6
1815 Male, age 53, unknown 68.2
2407 Male, age 75, both hemispheres 63.4
2273 Male, age 74, both hemispheres 63.0
2667 Female, age 75, unknown 60.7
1817 Female, age 42, unknown 60.4
1816 Male, age 51, unknown 55.7
2007 Male, age 72, unknown 54.8
1944 Female, age 72, unknown 53.6
Red nucleus
nTPM: 84.9
2503 Female, age 72, unknown 99.1
2588 Male, age 74, left hemisphere 93.0
2227 Male, age 72, unknown 91.7
2584 Male, age 75, left hemisphere 90.1
2769 Male, age 72, unknown 90.1
1904 Male, age 53, unknown 86.7
2725 Female, age 75, unknown 82.7
2823 Male, age 76, right hemisphere 81.9
1865 Male, age 51, unknown 79.6
2785 Male, age 18, unknown 77.1
1954 Female, age 42, unknown 76.6
1821 Female, age 72, unknown 70.7
Substantia nigra
nTPM: 77.1
2699 Male, age 18, unknown 100.5
2665 Male, age 74, both hemispheres 94.3
2590 Female, age 75, unknown 88.7
2583 Male, age 75, right hemisphere 81.9
1851 Male, age 51, unknown 81.8
2409 Female, age 72, unknown 72.9
1941 Male, age 53, unknown 70.6
1916 Female, age 42, unknown 67.0
2241 Male, age 72, unknown 59.2
1889 Female, age 72, unknown 53.7
Superior colliculus
nTPM: 72.2
1995 Male, age 72, unknown 91.0
1913 Female, age 42, unknown 82.2
1839 Male, age 51, unknown 79.2
2664 Male, age 75, both hemispheres 78.8
2587 Male, age 74, left hemisphere 77.8
1796 Male, age 53, unknown 75.7
2261 Male, age 18, unknown 62.5
2087 Female, age 72, unknown 61.9
1895 Male, age 76, right hemisphere 57.3
2668 Female, age 75, unknown 55.2
Ventral tegmental area
nTPM: 72.8
2410 Female, age 72, unknown 75.5
1942 Male, age 51, unknown 74.8
2021 Male, age 53, unknown 74.2
1915 Female, age 42, unknown 73.9
2223 Female, age 72, unknown 70.4
2218 Male, age 76, both hemispheres 68.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 63.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 63.9
Samples: 139

Max nTPM: 115.6
Min nTPM: 25.6
Std nTPM: 21.0
Median nTPM: 59.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 115.6
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 113.6
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 109.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 108.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 107.2
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 106.9
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 103.0
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 101.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 101.4
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 101.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 101.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 119.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 119.6
FF:10158-103A5 76 years, female 119.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 61.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 42.8
Samples: 4

Max nTPM: 59.8
Min nTPM: 31.4
Sample A Female 41.1
Sample B Female 59.8
Sample C Male 38.7
Sample D Male 31.4
Midbrain
nTPM: 36.1
Samples: 4

Max nTPM: 46.9
Min nTPM: 29.3
Sample A Female 36.2
Sample B Female 29.3
Sample C Male 46.9
Sample D Male 31.8
Periaqueductal gray
nTPM: 30.3
Samples: 3

Max nTPM: 35.3
Min nTPM: 24.4
Sample B Female 31.2
Sample C Male 35.3
Sample D Male 24.4
Superior colliculi
nTPM: 61.9
Samples: 4

Max nTPM: 110.4
Min nTPM: 37.3
Sample A Female 59.2
Sample B Female 110.4
Sample C Male 40.7
Sample D Male 37.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 5.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 5.6
Samples: 4

Max nTPM: 7.1
Min nTPM: 4.5
Sample A Male 5.5
Sample B Male 7.1
Sample C Female 4.5
Sample D Female 5.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
68745179 Antisense, RP_050210_01_D06, Mouse strain C57BL/6J (56 days, male) 0.2

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