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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Ganglion cells :
Not detected
Inner nuclear layer:
Not detected
Inner plexiform layer:
Not detected
Limiting membrane:
High
Nerve fiber layer:
Not detected
Outer plexiform layer:
Not detected
Photoreceptor cells:
Not detected
Pigment epithelial cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
12.1
nTPM
GTEx:
12.1
nTPM
FANTOM5:
120.8
Scaled Tags Per Million
Pig:
34.3
nTPM
Mouse:
11.8
nTPM
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA057244
Pigment epithelial cells
Not detected
Photoreceptor cells
Not detected
Limiting membrane
High
Outer plexiform layer
Low
Inner nuclear layer
Not detected
Inner plexiform layer
Not detected
Ganglion cells
Not detected
Nerve fiber layer
Not detected
RETINA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
12.1
GTEx sample id
Sample description
nTPM
Retina Average nTPM: 12.1
Samples: 105
Max nTPM: 26.3
Min nTPM: 3.5
Std nTPM: 4.0
Median nTPM:
413_1
59 years, female
26.3
414_1
84 years, female
22.9
468_1
89 years, male
21.1
311_1
78 years, male
19.4
149_1
88 years, male
19.0
415_1
77 years, female
19.0
319_1
81 years, male
18.5
490_1
67 years, female
18.2
139_1
64 years, female
18.0
324_1
76 years, male
18.0
466_1
57 years, female
17.6
89_1
63 years, male
17.5
6_1
73 years, female
17.2
375_1
74 years, female
17.0
265_1
87 years, male
16.1
526_1
61 years, male
16.1
43_1
64 years, female
15.8
254_1
77 years, female
15.7
350_1
84 years, female
15.6
318_1
68 years, male
15.5
313_1
79 years, female
15.3
349_1
83 years, male
15.2
246_1
77 years, male
15.0
18_1
88 years, male
14.8
162_1
79 years, female
14.7
32_1
67 years, male
14.6
126_1
63 years, male
14.6
335_1
73 years, female
14.4
352_1
62 years, male
14.3
9_1
66 years, female
14.2
406_1
79 years, male
14.2
348_1
84 years, male
14.0
501_1
88 years, male
14.0
292_1
71 years, male
13.6
355_1
70 years, female
13.6
81_1
67 years, male
13.5
499_1
55 years, female
13.5
35_1
74 years, female
13.3
288_1
66 years, female
13.3
347_1
72 years, male
13.3
243_1
75 years, male
13.2
177_1
74 years, male
13.0
153_1
70 years, female
12.9
109_1
81 years, female
12.7
145_1
84 years, male
12.7
425_1
59 years, female
12.7
217_1
76 years, male
12.6
4_1
88 years, female
12.5
321_1
62 years, female
12.5
142_1
61 years, female
12.4
351_1
91 years, male
12.4
266_1
85 years, male
12.3
389_1
86 years, female
12.2
404_1
82 years, female
12.2
286_1
68 years, female
11.6
518_1
75 years, female
11.6
517_1
88 years, male
11.5
295_1
61 years, female
11.4
396_1
62 years, male
11.3
495_1
57 years, female
11.2
251_1
78 years, male
11.0
386_1
76 years, male
10.9
173_1
67 years, male
10.7
293_1
68 years, female
10.7
307_1
66 years, female
10.7
115_1
83 years, male
10.6
503_1
68 years, male
10.6
189_1
76 years, male
10.4
237_1
82 years, male
10.4
320_1
89 years, female
10.4
2_1
77 years, female
10.3
308_1
70 years, female
9.8
377_1
82 years, female
9.7
491_1
89 years, female
9.6
163_1
78 years, male
9.5
17_1
71 years, male
9.4
376_1
75 years, female
9.2
384_1
83 years, male
9.1
119_1
70 years, female
9.0
137_1
83 years, male
8.8
117_1
61 years, male
8.7
218_1
71 years, female
8.7
314_1
67 years, male
8.7
356_1
87 years, female
8.7
354_1
81 years, female
8.4
379_1
60 years, male
8.4
264_1
73 years, female
8.0
315_1
62 years, female
8.0
322_1
76 years, male
7.9
99_1
64 years, male
7.7
120_1
70 years, female
7.7
447_1
81 years, male
7.3
394_1
75 years, female
7.1
41_1
94 years, female
6.9
353_1
82 years, female
6.8
506_1
65 years, male
6.7
317_1
60 years, male
6.5
42_1
85 years, male
6.4
291_1
76 years, male
6.4
480_1
63 years, male
6.4
172_1
72 years, female
6.1
316_1
62 years, male
5.9
405_1
91 years, male
5.3
229_1
69 years, female
5.0
452_1
88 years, female
3.5
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RETINA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
