MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:10.0 nTPM
HPA Brain:28.2 nTPM
GTEx:10.0 nTPM
FANTOM5:18.7 Scaled Tags Per Million
Pig:13.9 nTPM
Mouse:13.5 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 28.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 20.8
2586 Male, age 75, left hemisphere 26.2
2019 Male, age 18, unknown 23.2
2666 Male, age 74, left hemisphere 22.6
1870 Female, age 42, unknown 22.3
2828 Female, age 72, unknown 22.2
1830 Male, age 51, unknown 20.3
1833 Male, age 53, unknown 20.0
1827 Male, age 72, unknown 19.7
2411 Female, age 72, unknown 17.9
2219 Male, age 76, both hemispheres 13.0
Dorsal raphe nucleus
nTPM: 22.7
2016 Female, age 72, unknown 26.2
1828 Male, age 53, unknown 25.0
2298 Female, age 72, unknown 22.7
2047 Male, age 72, unknown 22.6
2750 Male, age 76, both hemispheres 16.9
Inferior colliculus
nTPM: 23.7
2097 Female, age 72, unknown 27.2
1848 Female, age 42, unknown 24.0
1890 Male, age 53, unknown 23.5
2849 Male, age 72, unknown 20.1
Median raphe nucleus
nTPM: 16.2
2220 Male, age 76, midline 16.2
Periaquaductal grey, anterior
nTPM: 28.2
1947 Male, age 18, unknown 29.7
2502 Female, age 75, unknown 29.0
1795 Male, age 51, unknown 26.0
Periaquaductal grey, dorsal
nTPM: 23.7
2850 Male, age 76, both hemispheres 27.6
1840 Male, age 53, unknown 23.9
2464 Female, age 72, unknown 22.4
1831 Male, age 72, unknown 20.7
Periaquaductal grey, lateral
nTPM: 22.8
2140 Male, age 76, both hemispheres 27.2
2053 Male, age 18, unknown 20.7
2272 Male, age 74, both hemispheres 20.6
Pretectal area
nTPM: 21.9
2273 Male, age 74, both hemispheres 25.3
2007 Male, age 72, unknown 24.5
1817 Female, age 42, unknown 24.3
2667 Female, age 75, unknown 23.9
2224 Female, age 72, unknown 22.2
2316 Male, age 76, right hemisphere 21.4
1816 Male, age 51, unknown 20.9
1815 Male, age 53, unknown 20.7
1944 Female, age 72, unknown 20.5
2825 Male, age 18, unknown 20.0
2407 Male, age 75, both hemispheres 17.2
Red nucleus
nTPM: 23.0
1954 Female, age 42, unknown 30.6
1821 Female, age 72, unknown 26.3
2227 Male, age 72, unknown 24.9
2503 Female, age 72, unknown 24.8
1904 Male, age 53, unknown 24.3
2769 Male, age 72, unknown 24.2
1865 Male, age 51, unknown 23.2
2588 Male, age 74, left hemisphere 21.9
2785 Male, age 18, unknown 21.5
2725 Female, age 75, unknown 18.6
2823 Male, age 76, right hemisphere 18.6
2584 Male, age 75, left hemisphere 17.6
Substantia nigra
nTPM: 22.0
2665 Male, age 74, both hemispheres 26.3
2241 Male, age 72, unknown 23.6
1916 Female, age 42, unknown 23.1
1889 Female, age 72, unknown 22.6
1851 Male, age 51, unknown 22.1
2590 Female, age 75, unknown 21.5
2699 Male, age 18, unknown 21.5
2583 Male, age 75, right hemisphere 21.1
2409 Female, age 72, unknown 19.5
1941 Male, age 53, unknown 18.5
Superior colliculus
nTPM: 20.8
2664 Male, age 75, both hemispheres 23.0
2668 Female, age 75, unknown 22.7
1839 Male, age 51, unknown 22.5
2587 Male, age 74, left hemisphere 22.4
2261 Male, age 18, unknown 22.1
2087 Female, age 72, unknown 20.6
1796 Male, age 53, unknown 20.1
1995 Male, age 72, unknown 20.1
1913 Female, age 42, unknown 18.5
1895 Male, age 76, right hemisphere 15.7
Ventral tegmental area
nTPM: 20.5
2021 Male, age 53, unknown 22.2
1942 Male, age 51, unknown 20.9
2223 Female, age 72, unknown 20.9
2410 Female, age 72, unknown 20.4
1915 Female, age 42, unknown 19.6
2218 Male, age 76, both hemispheres 19.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 10.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 10.0
Samples: 139

Max nTPM: 28.5
Min nTPM: 3.6
Std nTPM: 4.2
Median nTPM: 8.9
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 28.5
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 21.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 21.2
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 20.8
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 20.4
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 20.2
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 19.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 19.0
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 17.8
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 17.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 16.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 18.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 18.7
FF:10158-103A5 76 years, female 18.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 13.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 12.0
Samples: 4

Max nTPM: 13.8
Min nTPM: 11.2
Sample A Female 13.8
Sample B Female 11.6
Sample C Male 11.2
Sample D Male 11.4
Midbrain
nTPM: 12.5
Samples: 4

Max nTPM: 13.1
Min nTPM: 11.3
Sample A Female 13.1
Sample B Female 12.4
Sample C Male 13.1
Sample D Male 11.3
Periaqueductal gray
nTPM: 11.8
Samples: 3

Max nTPM: 12.7
Min nTPM: 11.0
Sample B Female 11.8
Sample C Male 12.7
Sample D Male 11.0
Superior colliculi
nTPM: 13.9
Samples: 4

Max nTPM: 16.6
Min nTPM: 12.3
Sample A Female 13.6
Sample B Female 16.6
Sample C Male 12.3
Sample D Male 13.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 13.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.5
Samples: 4

Max nTPM: 13.8
Min nTPM: 13.2
Sample A Male 13.6
Sample B Male 13.2
Sample C Female 13.4
Sample D Female 13.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
69873893 Antisense, RP_050512_02_C03, Mouse strain C57BL/6J (56 days, male) 0.2

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