HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:51.5 nTPM
HPA Brain:39.9 nTPM
GTEx:51.5 nTPM
FANTOM5:62.2 Scaled Tags Per Million
Pig:24.9 nTPM
Mouse:98.2 nTPM
Allen mouse:0.3 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA036539
Glial cells Low
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 39.9
Sample id Sample description nTPM
Hippocampus
nTPM: 26.6
1898 Male, age 80, left hemisphere 38.9
2621 Female, age 67, right hemisphere 31.3
2529 Female, age 94, left hemisphere 23.3
2148 Female, age 91, left hemisphere 23.2
1855 Male, age 76, left hemisphere 22.6
1911 Female, age 85, right hemisphere 20.4
Dentate gyrus
nTPM: 24.0
1927 Female, age 91, both hemispheres 31.4
2530 Female, age 94, left hemisphere 28.5
2010 Male, age 76, both hemispheres 25.6
2531 Female, age 67, both hemispheres 23.5
2246 Female, age 85, both hemispheres 21.4
2528 Male, age 74, both hemispheres 13.5
Entorhinal gyrus
nTPM: 32.0
2613 Female, age 94, left hemisphere 37.5
2764 Male, age 80, right hemisphere 36.6
1938 Female, age 85, left hemisphere 35.4
2686 Male, age 75, right hemisphere 33.8
1787 Male, age 76, left hemisphere 29.5
2117 Female, age 91, right hemisphere 19.3
Hippocampus, CA1
nTPM: 30.2
2749 Male, age 80, left hemisphere 59.9
1873 Female, age 85, both hemispheres 30.4
2527 Male, age 74, both hemispheres 23.4
2045 Male, age 76, both hemispheres 19.9
2082 Female, age 91, right hemisphere 17.5
Hippocampus, CA2
nTPM: 28.6
1892 Male, age 76, both hemispheres 46.4
1963 Male, age 80, left hemisphere 39.4
1940 Female, age 85, left hemisphere 25.5
2437 Female, age 94, left hemisphere 22.4
2249 Male, age 74, both hemispheres 21.0
2113 Female, age 91, right hemisphere 16.9
Hippocampus, CA3
nTPM: 29.3
2137 Male, age 80, left hemisphere 41.7
1867 Male, age 76, both hemispheres 35.8
2436 Male, age 74, both hemispheres 27.3
2861 Female, age 67, both hemispheres 25.9
1891 Female, age 85, both hemispheres 25.4
2620 Female, age 94, left hemisphere 19.8
Parahippocampal cortex
nTPM: 28.6
1850 Male, age 80, both hemispheres 42.2
1990 Female, age 91, right hemisphere 36.7
2622 Female, age 67, right hemisphere 36.2
2245 Female, age 91, both hemispheres 33.0
1933 Female, age 85, both hemispheres 28.9
2250 Female, age 67, right hemisphere 23.4
2532 Female, age 72, left hemisphere 22.4
2693 Female, age 94, both hemispheres 22.0
2018 Male, age 76, both hemispheres 20.9
2692 Male, age 74, both hemispheres 20.6
Perirhinal gyrus
nTPM: 39.9
1847 Female, age 91, left hemisphere 54.7
1794 Male, age 80, right hemisphere 40.9
1841 Female, age 85, right hemisphere 38.7
2521 Female, age 94, right hemisphere 38.3
2848 Male, age 76, right hemisphere 27.0
Subiculum
nTPM: 23.9
1901 Male, age 80, both hemispheres 36.4
1977 Female, age 85, both hemispheres 30.9
2438 Female, age 94, left hemisphere 24.1
2619 Male, age 74, both hemispheres 20.9
2042 Male, age 76, both hemispheres 19.2
2729 Female, age 91, right hemisphere 12.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 51.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 51.5
Samples: 197

Max nTPM: 90.3
Min nTPM: 25.1
Std nTPM: 14.9
Median nTPM: 49.0
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 90.3
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 88.7
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 87.9
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 87.4
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 84.4
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 84.2
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 82.8
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 82.0
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 81.8
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 79.7
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 79.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 62.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 62.2
FF:10153-102I9 76 years, female 64.1
FF:10169-103B7 60 years, female 60.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 24.9
Pig sample Sample description nTPM
Subiculum
nTPM: 20.6
Samples: 4

Max nTPM: 26.5
Min nTPM: 17.8
Sample A Female 26.5
Sample B Female 18.6
Sample C Male 19.3
Sample D Male 17.8
Dorsal hippocampus
nTPM: 24.9
Samples: 4

Max nTPM: 31.4
Min nTPM: 21.0
Sample A Female 31.4
Sample B Female 25.9
Sample C Male 21.0
Sample D Male 21.4
Entorhinal cortex
nTPM: 21.6
Samples: 4

Max nTPM: 24.2
Min nTPM: 18.5
Sample A Female 23.6
Sample B Female 24.2
Sample C Male 19.9
Sample D Male 18.5
Ventral hippocampus
nTPM: 22.4
Samples: 4

Max nTPM: 26.4
Min nTPM: 16.3
Sample A Female 22.4
Sample B Female 16.3
Sample C Male 26.4
Sample D Male 24.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 98.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 98.2
Samples: 4

Max nTPM: 106.0
Min nTPM: 89.4
Sample A Male 89.4
Sample B Male 102.4
Sample C Female 95.0
Sample D Female 106.0
Hippocampal formation
nTPM: 97.2
Samples: 4

Max nTPM: 102.2
Min nTPM: 89.3
Sample A Male 100.2
Sample B Male 96.9
Sample C Female 102.2
Sample D Female 89.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.3
554 Antisense, RP_040304_01_03, Mouse strain C57BL/6J (56 days, male) 0.3
555 Antisense, RP_040304_01_03, Mouse strain C57BL/6J (56 days, male) 0.1

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