MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:35.5 nTPM
HPA Brain:30.2 nTPM
GTEx:35.5 nTPM
FANTOM5:108.4 Scaled Tags Per Million
Pig:15.2 nTPM
Mouse:2.1 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 30.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.2
2828 Female, age 72, unknown 22.2
2666 Male, age 74, left hemisphere 17.6
1830 Male, age 51, unknown 17.5
2411 Female, age 72, unknown 17.5
2019 Male, age 18, unknown 16.7
1833 Male, age 53, unknown 16.1
1870 Female, age 42, unknown 15.6
2219 Male, age 76, both hemispheres 14.2
2586 Male, age 75, left hemisphere 12.8
1827 Male, age 72, unknown 12.2
Dorsal raphe nucleus
nTPM: 27.1
2298 Female, age 72, unknown 42.9
2016 Female, age 72, unknown 29.3
2750 Male, age 76, both hemispheres 24.6
2047 Male, age 72, unknown 19.6
1828 Male, age 53, unknown 18.8
Inferior colliculus
nTPM: 20.4
2097 Female, age 72, unknown 24.7
1890 Male, age 53, unknown 21.2
1848 Female, age 42, unknown 19.0
2849 Male, age 72, unknown 16.8
Median raphe nucleus
nTPM: 21.6
2220 Male, age 76, midline 21.6
Periaquaductal grey, anterior
nTPM: 21.4
1795 Male, age 51, unknown 30.3
1947 Male, age 18, unknown 19.2
2502 Female, age 75, unknown 14.7
Periaquaductal grey, dorsal
nTPM: 29.5
1831 Male, age 72, unknown 44.3
1840 Male, age 53, unknown 30.2
2850 Male, age 76, both hemispheres 21.8
2464 Female, age 72, unknown 21.6
Periaquaductal grey, lateral
nTPM: 30.2
2272 Male, age 74, both hemispheres 42.5
2053 Male, age 18, unknown 27.5
2140 Male, age 76, both hemispheres 20.7
Pretectal area
nTPM: 23.2
2407 Male, age 75, both hemispheres 36.6
2273 Male, age 74, both hemispheres 34.5
2316 Male, age 76, right hemisphere 29.1
2224 Female, age 72, unknown 24.8
2007 Male, age 72, unknown 24.5
2825 Male, age 18, unknown 22.8
1815 Male, age 53, unknown 20.9
1944 Female, age 72, unknown 20.3
1817 Female, age 42, unknown 15.5
1816 Male, age 51, unknown 14.1
2667 Female, age 75, unknown 11.8
Red nucleus
nTPM: 16.4
2725 Female, age 75, unknown 24.5
2503 Female, age 72, unknown 24.1
2823 Male, age 76, right hemisphere 19.5
2584 Male, age 75, left hemisphere 17.3
1865 Male, age 51, unknown 16.8
2227 Male, age 72, unknown 16.1
2769 Male, age 72, unknown 15.6
2785 Male, age 18, unknown 15.2
1821 Female, age 72, unknown 14.9
1904 Male, age 53, unknown 13.1
1954 Female, age 42, unknown 10.6
2588 Male, age 74, left hemisphere 9.3
Substantia nigra
nTPM: 24.4
2590 Female, age 75, unknown 51.9
2665 Male, age 74, both hemispheres 29.5
2699 Male, age 18, unknown 24.7
1851 Male, age 51, unknown 22.9
1916 Female, age 42, unknown 21.9
2409 Female, age 72, unknown 21.7
1941 Male, age 53, unknown 20.6
2583 Male, age 75, right hemisphere 20.4
2241 Male, age 72, unknown 17.3
1889 Female, age 72, unknown 13.5
Superior colliculus
nTPM: 20.5
1995 Male, age 72, unknown 30.8
2087 Female, age 72, unknown 23.5
2587 Male, age 74, left hemisphere 22.7
1913 Female, age 42, unknown 22.3
1796 Male, age 53, unknown 21.7
2261 Male, age 18, unknown 19.9
1839 Male, age 51, unknown 19.8
2664 Male, age 75, both hemispheres 19.4
2668 Female, age 75, unknown 14.4
1895 Male, age 76, right hemisphere 10.4
Ventral tegmental area
nTPM: 24.3
2021 Male, age 53, unknown 36.8
1915 Female, age 42, unknown 27.1
2218 Male, age 76, both hemispheres 24.1
1942 Male, age 51, unknown 21.4
2410 Female, age 72, unknown 20.1
2223 Female, age 72, unknown 16.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 35.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 35.5
Samples: 139

Max nTPM: 231.6
Min nTPM: 3.1
Std nTPM: 44.0
Median nTPM: 19.1
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 231.6
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 222.5
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 215.3
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 197.8
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 178.7
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 175.8
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 115.2
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 114.8
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 113.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 112.3
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 107.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 108.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 108.4
FF:10158-103A5 76 years, female 108.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 15.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 12.3
Samples: 4

Max nTPM: 13.8
Min nTPM: 9.9
Sample A Female 9.9
Sample B Female 13.8
Sample C Male 12.5
Sample D Male 13.0
Midbrain
nTPM: 10.7
Samples: 4

Max nTPM: 13.6
Min nTPM: 6.9
Sample A Female 12.3
Sample B Female 13.6
Sample C Male 6.9
Sample D Male 9.8
Periaqueductal gray
nTPM: 15.2
Samples: 3

Max nTPM: 16.3
Min nTPM: 14.0
Sample B Female 14.0
Sample C Male 16.3
Sample D Male 15.4
Superior colliculi
nTPM: 8.7
Samples: 4

Max nTPM: 10.4
Min nTPM: 7.4
Sample A Female 10.4
Sample B Female 7.7
Sample C Male 7.4
Sample D Male 9.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 2.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 2.2
Samples: 4

Max nTPM: 2.4
Min nTPM: 1.9
Sample A Male 2.4
Sample B Male 2.2
Sample C Female 1.9
Sample D Female 2.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
69028521 Antisense, RP_050316_01_E01, Mouse strain C57BL/6J (56 days, male) 0.2

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