BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni
Consensus:24.7 nTPM
HPA Brain:24.5 nTPM
GTEx:24.7 nTPM
FANTOM5:65.6 Scaled Tags Per Million
Pig:46.2 nTPM
Mouse:18.2 nTPM
Allen mouse:0.7 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA011036Antibody HPA011057
Glial cells MediumMedium
Neuronal cells HighLow





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 24.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 21.8
2288 Male, age 75, left hemisphere 27.9
2481 Female, age 94, left hemisphere 24.1
2290 Female, age 72, unknown 22.9
1854 Male, age 80, left hemisphere 20.9
1857 Female, age 85, left hemisphere 20.5
1781 Male, age 74, unknown 19.7
2846 Female, age 79, unknown 19.2
2289 Male, age 61, right hemisphere 18.7
Globus pallidus, externus
nTPM: 24.5
2772 Female, age 79, unknown 30.9
1996 Male, age 80, right hemisphere 29.3
2395 Male, age 75, both hemispheres 26.6
2567 Female, age 72, unknown 19.2
2646 Male, age 61, right hemisphere 16.6
Globus pallidus, internus
nTPM: 23.8
2778 Female, age 91, both hemispheres 28.6
2287 Male, age 75, right hemisphere 28.0
2483 Female, age 94, right hemisphere 25.7
2037 Male, age 80, right hemisphere 23.3
2111 Female, age 85, right hemisphere 21.3
1818 Male, age 74, unknown 20.7
2566 Female, age 72, unknown 18.7
Nucleus accumbens
nTPM: 22.1
2286 Male, age 75, left hemisphere 25.8
1856 Female, age 91, right hemisphere 23.2
2391 Female, age 94, left hemisphere 22.2
2732 Male, age 80, right hemisphere 22.1
2824 Male, age 61, right hemisphere 21.5
2698 Female, age 72, unknown 21.0
1783 Male, age 74, unknown 20.9
1806 Female, age 85, left hemisphere 20.4
Nucleus basalis of Meynert
nTPM: 20.3
2569 Male, age 61, both hemispheres 21.1
2393 Male, age 80, right hemisphere 20.8
2484 Female, age 94, left hemisphere 19.9
2821 Male, age 75, both hemispheres 19.3
Nucleus of the diagonal band
nTPM: 24.3
2775 Male, age 80, right hemisphere 27.5
2029 Male, age 61, right hemisphere 25.2
2195 Female, age 85, both hemispheres 23.2
1812 Female, age 91, both hemispheres 23.1
1979 Male, age 74, unknown 22.8
Putamen
nTPM: 20.6
2466 Female, age 79, unknown 24.8
2482 Female, age 94, left hemisphere 23.8
1937 Female, age 91, right hemisphere 22.2
1829 Male, age 74, unknown 20.0
1838 Male, age 80, right hemisphere 18.6
2647 Male, age 75, left hemisphere 17.8
2489 Female, age 72, unknown 17.2
Septal nuclei
nTPM: 24.4
2031 Female, age 72, unknown 34.1
1960 Male, age 74, unknown 28.0
2009 Female, age 91, both hemispheres 24.8
2629 Female, age 94, right hemisphere 23.4
2394 Male, age 61, left hemisphere 21.3
2059 Female, age 85, both hemispheres 21.2
2199 Male, age 80, right hemisphere 17.9
Stria terminalis, bed nucleus
nTPM: 22.9
1974 Female, age 91, both hemispheres 26.9
2486 Female, age 94, both hemispheres 23.3
2201 Male, age 74, unknown 18.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 24.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 23.3
Samples: 246

Max nTPM: 42.1
Min nTPM: 15.2
Std nTPM: 4.2
Median nTPM: 22.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 42.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 40.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 39.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 38.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 36.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 34.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 33.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 31.6
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 31.4
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 31.2
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 30.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 23.6
Samples: 246

Max nTPM: 44.2
Min nTPM: 13.7
Std nTPM: 4.2
Median nTPM: 23.2
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 44.2
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 40.3
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 37.3
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 35.7
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 35.4
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 34.8
GTEX-WWYW-0011-R6A-SM-3NB3G 50-59 years, female 34.4
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 34.1
GTEX-1EMGI-0011-R6a-SM-9OSVR 60-69 years, male 31.5
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 31.4
GTEX-1192X-0011-R6a-SM-DNZZB 50-59 years, male 31.2
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Brain - Putamen (basal ganglia)
Average nTPM: 24.7
Samples: 205

Max nTPM: 42.7
Min nTPM: 16.2
Std nTPM: 4.2
Median nTPM: 24.2
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 42.7
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 41.9
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 37.7
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 36.9
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 35.2
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 35.1
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 34.3
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 32.7
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 32.7
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 32.3
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 32.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 65.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 53.8
FF:10164-103B2 76 years, female 53.8
Nucleus accumbens
Scaled Tags Per Million: 61.2
FF:10037-101F1 23-56 years, mixed 61.2
Putamen
Scaled Tags Per Million: 65.6
FF:10176-103C5 60 years, female 65.6
Globus pallidus
Scaled Tags Per Million: 63.5
FF:10175-103C4 60 years, female 75.3
FF:10161-103A8 76 years, female 51.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 46.2
Pig sample Sample description nTPM
Caudate
nTPM: 39.4
Samples: 4

Max nTPM: 43.1
Min nTPM: 32.0
Sample A Female 40.5
Sample B Female 43.1
Sample C Male 41.8
Sample D Male 32.0
Putamen
nTPM: 37.9
Samples: 4

Max nTPM: 43.0
Min nTPM: 32.1
Sample A Female 43.0
Sample B Female 32.1
Sample C Male 38.7
Sample D Male 37.8
Septum
nTPM: 46.2
Samples: 4

Max nTPM: 49.8
Min nTPM: 41.4
Sample A Female 46.9
Sample B Female 41.4
Sample C Male 49.8
Sample D Male 46.8
Ventral pallidum
nTPM: 41.3
Samples: 4

Max nTPM: 43.5
Min nTPM: 38.8
Sample A Female 38.8
Sample B Female 43.5
Sample C Male 40.7
Sample D Male 42.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 18.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 16.2
Samples: 4

Max nTPM: 18.4
Min nTPM: 14.8
Sample A Male 18.4
Sample B Male 14.8
Sample C Female 15.8
Sample D Female 15.7
Septum
nTPM: 18.2
Samples: 4

Max nTPM: 19.8
Min nTPM: 16.8
Sample A Male 19.1
Sample B Male 19.8
Sample C Female 17.0
Sample D Female 16.8
Ventral forebrain
nTPM: 15.3
Samples: 4

Max nTPM: 16.2
Min nTPM: 14.5
Sample A Male 16.2
Sample B Male 15.5
Sample C Female 15.1
Sample D Female 14.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.7
68924769 Antisense, RP_050309_01_A02, Mouse strain C57BL/6J (56 days, male) 0.7
Pallidum
Expression energy: 0.7
68924769 Antisense, RP_050309_01_A02, Mouse strain C57BL/6J (56 days, male) 0.7

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