HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni
Consensus:77.6 nTPM
HPA Brain:51.7 nTPM
GTEx:77.6 nTPM
FANTOM5:179.3 Scaled Tags Per Million
Pig:37.1 nTPM
Mouse:43.1 nTPM
Allen mouse:0.3 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA035301
Glial cells Medium
Neuronal cells Medium


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 51.7
Sample id Sample description nTPM
Hippocampus
nTPM: 48.4
2529 Female, age 94, left hemisphere 53.1
1898 Male, age 80, left hemisphere 51.9
1855 Male, age 76, left hemisphere 50.8
2621 Female, age 67, right hemisphere 46.1
1911 Female, age 85, right hemisphere 45.8
2148 Female, age 91, left hemisphere 42.9
Dentate gyrus
nTPM: 47.0
2010 Male, age 76, both hemispheres 50.7
2528 Male, age 74, both hemispheres 50.5
1927 Female, age 91, both hemispheres 49.5
2530 Female, age 94, left hemisphere 48.3
2246 Female, age 85, both hemispheres 42.7
2531 Female, age 67, both hemispheres 40.3
Entorhinal gyrus
nTPM: 45.8
1938 Female, age 85, left hemisphere 51.5
2117 Female, age 91, right hemisphere 48.1
2764 Male, age 80, right hemisphere 48.0
1787 Male, age 76, left hemisphere 43.5
2686 Male, age 75, right hemisphere 43.3
2613 Female, age 94, left hemisphere 40.6
Hippocampus, CA1
nTPM: 51.7
2749 Male, age 80, left hemisphere 55.6
1873 Female, age 85, both hemispheres 52.5
2045 Male, age 76, both hemispheres 52.3
2527 Male, age 74, both hemispheres 51.6
2082 Female, age 91, right hemisphere 46.4
Hippocampus, CA2
nTPM: 49.9
1892 Male, age 76, both hemispheres 60.2
1963 Male, age 80, left hemisphere 56.4
2249 Male, age 74, both hemispheres 51.1
2437 Female, age 94, left hemisphere 45.5
1940 Female, age 85, left hemisphere 43.8
2113 Female, age 91, right hemisphere 42.3
Hippocampus, CA3
nTPM: 47.6
1867 Male, age 76, both hemispheres 59.2
2436 Male, age 74, both hemispheres 50.6
1891 Female, age 85, both hemispheres 49.1
2620 Female, age 94, left hemisphere 47.4
2137 Male, age 80, left hemisphere 46.9
2861 Female, age 67, both hemispheres 32.7
Parahippocampal cortex
nTPM: 44.4
1933 Female, age 85, both hemispheres 50.2
1850 Male, age 80, both hemispheres 49.3
1990 Female, age 91, right hemisphere 48.4
2018 Male, age 76, both hemispheres 46.1
2692 Male, age 74, both hemispheres 44.1
2250 Female, age 67, right hemisphere 43.2
2693 Female, age 94, both hemispheres 43.0
2532 Female, age 72, left hemisphere 41.6
2245 Female, age 91, both hemispheres 40.9
2622 Female, age 67, right hemisphere 36.8
Perirhinal gyrus
nTPM: 45.7
1847 Female, age 91, left hemisphere 49.8
1841 Female, age 85, right hemisphere 47.2
1794 Male, age 80, right hemisphere 46.7
2521 Female, age 94, right hemisphere 42.8
2848 Male, age 76, right hemisphere 42.2
Subiculum
nTPM: 49.9
2042 Male, age 76, both hemispheres 54.1
1901 Male, age 80, both hemispheres 52.6
1977 Female, age 85, both hemispheres 48.5
2729 Female, age 91, right hemisphere 48.5
2619 Male, age 74, both hemispheres 48.2
2438 Female, age 94, left hemisphere 47.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 77.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 77.6
Samples: 197

Max nTPM: 232.4
Min nTPM: 15.4
Std nTPM: 21.1
Median nTPM: 73.7
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 232.4
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 139.1
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 133.8
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 132.5
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 125.3
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 122.9
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 121.3
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 118.0
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 114.8
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 113.1
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 112.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 179.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 179.3
FF:10169-103B7 60 years, female 203.5
FF:10153-102I9 76 years, female 155.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 37.1
Pig sample Sample description nTPM
Subiculum
nTPM: 23.1
Samples: 4

Max nTPM: 26.7
Min nTPM: 19.0
Sample A Female 26.7
Sample B Female 24.6
Sample C Male 19.0
Sample D Male 22.2
Dorsal hippocampus
nTPM: 37.1
Samples: 4

Max nTPM: 50.1
Min nTPM: 30.6
Sample A Female 50.1
Sample B Female 32.0
Sample C Male 35.8
Sample D Male 30.6
Entorhinal cortex
nTPM: 26.7
Samples: 4

Max nTPM: 31.6
Min nTPM: 22.3
Sample A Female 22.3
Sample B Female 31.6
Sample C Male 25.9
Sample D Male 26.8
Ventral hippocampus
nTPM: 27.2
Samples: 4

Max nTPM: 33.4
Min nTPM: 22.6
Sample A Female 33.4
Sample B Female 22.6
Sample C Male 22.9
Sample D Male 29.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 43.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 37.7
Samples: 4

Max nTPM: 42.1
Min nTPM: 33.0
Sample A Male 34.8
Sample B Male 42.1
Sample C Female 41.0
Sample D Female 33.0
Hippocampal formation
nTPM: 43.1
Samples: 4

Max nTPM: 50.6
Min nTPM: 37.9
Sample A Male 50.6
Sample B Male 37.9
Sample C Female 41.6
Sample D Female 42.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.3
70303534 Antisense, RP_050609_01_F12, Mouse strain C57BL/6J (56 days, male) 0.3
73930820 Antisense, RP_051214_04_C04, Mouse strain C57BL/6J (56 days, male) 0.3

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