MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.4 nTPM
HPA Brain:29.7 nTPM
GTEx:16.4 nTPM
FANTOM5:42.9 Scaled Tags Per Million
Pig:37.6 nTPM
Mouse:28.5 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 29.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 24.9
1870 Female, age 42, unknown 27.7
1833 Male, age 53, unknown 27.2
2019 Male, age 18, unknown 26.5
1830 Male, age 51, unknown 26.2
2586 Male, age 75, left hemisphere 26.0
2666 Male, age 74, left hemisphere 25.7
2828 Female, age 72, unknown 24.5
2411 Female, age 72, unknown 24.3
1827 Male, age 72, unknown 21.9
2219 Male, age 76, both hemispheres 18.6
Dorsal raphe nucleus
nTPM: 25.1
2016 Female, age 72, unknown 27.9
2298 Female, age 72, unknown 24.7
1828 Male, age 53, unknown 24.5
2750 Male, age 76, both hemispheres 24.5
2047 Male, age 72, unknown 23.8
Inferior colliculus
nTPM: 24.1
2849 Male, age 72, unknown 25.8
1848 Female, age 42, unknown 24.7
1890 Male, age 53, unknown 23.5
2097 Female, age 72, unknown 22.4
Median raphe nucleus
nTPM: 21.9
2220 Male, age 76, midline 21.9
Periaquaductal grey, anterior
nTPM: 23.7
2502 Female, age 75, unknown 25.2
1947 Male, age 18, unknown 23.2
1795 Male, age 51, unknown 22.6
Periaquaductal grey, dorsal
nTPM: 27.8
2850 Male, age 76, both hemispheres 35.1
1840 Male, age 53, unknown 27.0
1831 Male, age 72, unknown 25.6
2464 Female, age 72, unknown 23.7
Periaquaductal grey, lateral
nTPM: 29.7
2140 Male, age 76, both hemispheres 36.3
2053 Male, age 18, unknown 27.3
2272 Male, age 74, both hemispheres 25.6
Pretectal area
nTPM: 23.4
2407 Male, age 75, both hemispheres 26.8
2316 Male, age 76, right hemisphere 26.5
2273 Male, age 74, both hemispheres 25.9
2825 Male, age 18, unknown 25.4
2224 Female, age 72, unknown 25.1
1817 Female, age 42, unknown 22.9
1815 Male, age 53, unknown 22.5
2667 Female, age 75, unknown 21.9
2007 Male, age 72, unknown 21.8
1944 Female, age 72, unknown 19.3
1816 Male, age 51, unknown 19.2
Red nucleus
nTPM: 25.9
1865 Male, age 51, unknown 28.5
2769 Male, age 72, unknown 27.3
1904 Male, age 53, unknown 27.1
2227 Male, age 72, unknown 26.7
1954 Female, age 42, unknown 26.3
1821 Female, age 72, unknown 26.2
2584 Male, age 75, left hemisphere 26.2
2785 Male, age 18, unknown 26.1
2503 Female, age 72, unknown 25.1
2588 Male, age 74, left hemisphere 24.8
2823 Male, age 76, right hemisphere 23.7
2725 Female, age 75, unknown 22.4
Substantia nigra
nTPM: 22.3
2590 Female, age 75, unknown 26.4
2665 Male, age 74, both hemispheres 23.5
2583 Male, age 75, right hemisphere 23.4
2699 Male, age 18, unknown 22.5
1851 Male, age 51, unknown 22.1
1889 Female, age 72, unknown 22.0
1941 Male, age 53, unknown 21.9
2241 Male, age 72, unknown 21.6
1916 Female, age 42, unknown 19.9
2409 Female, age 72, unknown 19.1
Superior colliculus
nTPM: 23.8
1995 Male, age 72, unknown 28.3
1839 Male, age 51, unknown 27.2
1913 Female, age 42, unknown 25.9
2664 Male, age 75, both hemispheres 25.0
2587 Male, age 74, left hemisphere 23.3
2668 Female, age 75, unknown 22.8
1796 Male, age 53, unknown 22.0
2261 Male, age 18, unknown 21.6
1895 Male, age 76, right hemisphere 21.2
2087 Female, age 72, unknown 20.9
Ventral tegmental area
nTPM: 23.1
2223 Female, age 72, unknown 25.6
2021 Male, age 53, unknown 24.0
2410 Female, age 72, unknown 23.2
1915 Female, age 42, unknown 22.0
2218 Male, age 76, both hemispheres 22.0
1942 Male, age 51, unknown 21.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 16.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.4
Samples: 139

Max nTPM: 28.8
Min nTPM: 10.2
Std nTPM: 3.5
Median nTPM: 16.0
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 28.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 25.4
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 25.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 24.7
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 24.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 24.5
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 23.8
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 23.8
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 22.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 22.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 22.6
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 42.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 42.9
FF:10158-103A5 76 years, female 42.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 37.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 29.0
Samples: 4

Max nTPM: 32.1
Min nTPM: 26.0
Sample A Female 28.0
Sample B Female 32.1
Sample C Male 26.0
Sample D Male 29.9
Midbrain
nTPM: 29.4
Samples: 4

Max nTPM: 46.1
Min nTPM: 20.8
Sample A Female 46.1
Sample B Female 26.9
Sample C Male 23.8
Sample D Male 20.8
Periaqueductal gray
nTPM: 37.6
Samples: 3

Max nTPM: 42.0
Min nTPM: 34.8
Sample B Female 34.8
Sample C Male 42.0
Sample D Male 35.9
Superior colliculi
nTPM: 28.9
Samples: 4

Max nTPM: 36.9
Min nTPM: 24.3
Sample A Female 29.6
Sample B Female 36.9
Sample C Male 24.3
Sample D Male 24.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 28.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 28.5
Samples: 4

Max nTPM: 29.0
Min nTPM: 28.1
Sample A Male 28.5
Sample B Male 28.4
Sample C Female 28.1
Sample D Female 29.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
70539180 Antisense, RP_050324_02_D05, Mouse strain C57BL/6J (56 days, male) 0.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org