MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.6 nTPM
HPA Brain:19.3 nTPM
GTEx:11.6 nTPM
FANTOM5:34.6 Scaled Tags Per Million
Pig:17.0 nTPM
Mouse:17.3 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 19.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 19.1
1870 Female, age 42, unknown 22.7
2411 Female, age 72, unknown 22.0
1833 Male, age 53, unknown 20.2
1830 Male, age 51, unknown 19.5
1827 Male, age 72, unknown 18.8
2828 Female, age 72, unknown 18.5
2586 Male, age 75, left hemisphere 18.3
2019 Male, age 18, unknown 18.0
2219 Male, age 76, both hemispheres 16.7
2666 Male, age 74, left hemisphere 16.3
Dorsal raphe nucleus
nTPM: 17.6
2298 Female, age 72, unknown 18.4
2750 Male, age 76, both hemispheres 18.3
1828 Male, age 53, unknown 18.0
2047 Male, age 72, unknown 16.8
2016 Female, age 72, unknown 16.5
Inferior colliculus
nTPM: 18.7
2097 Female, age 72, unknown 21.8
1848 Female, age 42, unknown 18.6
1890 Male, age 53, unknown 18.3
2849 Male, age 72, unknown 16.0
Median raphe nucleus
nTPM: 16.8
2220 Male, age 76, midline 16.8
Periaquaductal grey, anterior
nTPM: 18.8
1947 Male, age 18, unknown 21.3
2502 Female, age 75, unknown 18.8
1795 Male, age 51, unknown 16.4
Periaquaductal grey, dorsal
nTPM: 17.5
2464 Female, age 72, unknown 20.3
1840 Male, age 53, unknown 18.0
1831 Male, age 72, unknown 16.5
2850 Male, age 76, both hemispheres 15.2
Periaquaductal grey, lateral
nTPM: 16.0
2053 Male, age 18, unknown 17.9
2272 Male, age 74, both hemispheres 16.3
2140 Male, age 76, both hemispheres 13.9
Pretectal area
nTPM: 17.3
1815 Male, age 53, unknown 18.6
2825 Male, age 18, unknown 18.3
1816 Male, age 51, unknown 18.2
2007 Male, age 72, unknown 18.2
2273 Male, age 74, both hemispheres 18.2
2667 Female, age 75, unknown 17.9
1817 Female, age 42, unknown 17.4
2407 Male, age 75, both hemispheres 16.1
1944 Female, age 72, unknown 15.9
2224 Female, age 72, unknown 15.9
2316 Male, age 76, right hemisphere 15.4
Red nucleus
nTPM: 19.3
1821 Female, age 72, unknown 23.4
1904 Male, age 53, unknown 20.5
2769 Male, age 72, unknown 20.1
2503 Female, age 72, unknown 20.0
2227 Male, age 72, unknown 19.5
2588 Male, age 74, left hemisphere 19.4
1954 Female, age 42, unknown 19.3
2584 Male, age 75, left hemisphere 19.2
1865 Male, age 51, unknown 18.5
2725 Female, age 75, unknown 18.0
2785 Male, age 18, unknown 17.9
2823 Male, age 76, right hemisphere 15.6
Substantia nigra
nTPM: 18.9
2409 Female, age 72, unknown 21.7
2583 Male, age 75, right hemisphere 21.5
2241 Male, age 72, unknown 20.5
1889 Female, age 72, unknown 19.2
1851 Male, age 51, unknown 19.1
2590 Female, age 75, unknown 18.9
1916 Female, age 42, unknown 18.7
1941 Male, age 53, unknown 18.0
2665 Male, age 74, both hemispheres 15.6
2699 Male, age 18, unknown 15.5
Superior colliculus
nTPM: 17.6
1839 Male, age 51, unknown 19.2
1913 Female, age 42, unknown 19.0
1995 Male, age 72, unknown 18.5
2261 Male, age 18, unknown 17.8
2668 Female, age 75, unknown 17.8
2664 Male, age 75, both hemispheres 17.6
2087 Female, age 72, unknown 17.1
2587 Male, age 74, left hemisphere 16.7
1796 Male, age 53, unknown 16.3
1895 Male, age 76, right hemisphere 15.6
Ventral tegmental area
nTPM: 16.9
2410 Female, age 72, unknown 21.6
1915 Female, age 42, unknown 17.9
2223 Female, age 72, unknown 16.8
1942 Male, age 51, unknown 16.5
2021 Male, age 53, unknown 14.7
2218 Male, age 76, both hemispheres 13.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 11.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 11.6
Samples: 139

Max nTPM: 18.4
Min nTPM: 7.8
Std nTPM: 1.8
Median nTPM: 11.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 18.4
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 16.2
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 15.5
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 15.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 15.4
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 15.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 15.0
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 14.6
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 14.5
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 14.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 14.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 34.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 34.6
FF:10158-103A5 76 years, female 34.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 17.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 15.9
Samples: 4

Max nTPM: 17.0
Min nTPM: 14.2
Sample A Female 16.9
Sample B Female 15.6
Sample C Male 17.0
Sample D Male 14.2
Midbrain
nTPM: 17.0
Samples: 4

Max nTPM: 18.8
Min nTPM: 15.9
Sample A Female 15.9
Sample B Female 16.5
Sample C Male 18.8
Sample D Male 16.6
Periaqueductal gray
nTPM: 16.5
Samples: 3

Max nTPM: 16.7
Min nTPM: 16.1
Sample B Female 16.6
Sample C Male 16.7
Sample D Male 16.1
Superior colliculi
nTPM: 15.6
Samples: 4

Max nTPM: 17.2
Min nTPM: 14.6
Sample A Female 15.6
Sample B Female 15.0
Sample C Male 17.2
Sample D Male 14.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 17.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 17.4
Samples: 4

Max nTPM: 18.3
Min nTPM: 16.3
Sample A Male 16.6
Sample B Male 18.3
Sample C Female 18.2
Sample D Female 16.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
68667754 Antisense, RP_050201_02_G09, Mouse strain C57BL/6J (56 days, male) 0.0

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