MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1299.7 nTPM
HPA Brain:68.5 nTPM
GTEx:1299.7 nTPM
FANTOM5:164.5 Scaled Tags Per Million
Pig:394.3 nTPM
Mouse:548.6 nTPM
Allen mouse:15.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 68.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 15.5
2411 Female, age 72, unknown 42.9
1870 Female, age 42, unknown 26.8
1827 Male, age 72, unknown 15.6
2666 Male, age 74, left hemisphere 13.2
1830 Male, age 51, unknown 11.3
2828 Female, age 72, unknown 10.0
1833 Male, age 53, unknown 9.5
2586 Male, age 75, left hemisphere 9.5
2219 Male, age 76, both hemispheres 9.0
2019 Male, age 18, unknown 7.1
Dorsal raphe nucleus
nTPM: 28.4
2016 Female, age 72, unknown 73.7
2750 Male, age 76, both hemispheres 34.6
1828 Male, age 53, unknown 20.6
2047 Male, age 72, unknown 8.1
2298 Female, age 72, unknown 5.2
Inferior colliculus
nTPM: 15.6
2849 Male, age 72, unknown 27.6
1890 Male, age 53, unknown 20.9
1848 Female, age 42, unknown 8.3
2097 Female, age 72, unknown 5.8
Median raphe nucleus
nTPM: 68.5
2220 Male, age 76, midline 68.5
Periaquaductal grey, anterior
nTPM: 8.6
1795 Male, age 51, unknown 12.4
1947 Male, age 18, unknown 9.6
2502 Female, age 75, unknown 3.9
Periaquaductal grey, dorsal
nTPM: 8.2
1831 Male, age 72, unknown 10.7
2464 Female, age 72, unknown 8.8
2850 Male, age 76, both hemispheres 6.8
1840 Male, age 53, unknown 6.4
Periaquaductal grey, lateral
nTPM: 19.6
2272 Male, age 74, both hemispheres 38.8
2140 Male, age 76, both hemispheres 12.3
2053 Male, age 18, unknown 7.6
Pretectal area
nTPM: 12.6
2825 Male, age 18, unknown 32.8
2224 Female, age 72, unknown 26.9
2273 Male, age 74, both hemispheres 15.1
2407 Male, age 75, both hemispheres 10.6
1816 Male, age 51, unknown 10.5
2316 Male, age 76, right hemisphere 10.0
1815 Male, age 53, unknown 8.7
1944 Female, age 72, unknown 7.7
2007 Male, age 72, unknown 7.1
1817 Female, age 42, unknown 5.1
2667 Female, age 75, unknown 4.2
Red nucleus
nTPM: 14.6
2227 Male, age 72, unknown 46.8
2503 Female, age 72, unknown 19.8
1821 Female, age 72, unknown 17.5
2725 Female, age 75, unknown 15.5
1904 Male, age 53, unknown 10.5
1954 Female, age 42, unknown 10.5
1865 Male, age 51, unknown 10.3
2584 Male, age 75, left hemisphere 10.3
2785 Male, age 18, unknown 8.9
2588 Male, age 74, left hemisphere 8.3
2769 Male, age 72, unknown 8.3
2823 Male, age 76, right hemisphere 7.8
Substantia nigra
nTPM: 14.1
2590 Female, age 75, unknown 29.4
2699 Male, age 18, unknown 23.7
2665 Male, age 74, both hemispheres 17.5
1941 Male, age 53, unknown 16.1
2409 Female, age 72, unknown 13.0
2583 Male, age 75, right hemisphere 10.3
1851 Male, age 51, unknown 9.4
1889 Female, age 72, unknown 9.3
2241 Male, age 72, unknown 7.9
1916 Female, age 42, unknown 4.5
Superior colliculus
nTPM: 14.6
1913 Female, age 42, unknown 20.9
1895 Male, age 76, right hemisphere 20.3
2668 Female, age 75, unknown 20.3
2664 Male, age 75, both hemispheres 18.5
1839 Male, age 51, unknown 17.8
1796 Male, age 53, unknown 14.2
2261 Male, age 18, unknown 9.6
2087 Female, age 72, unknown 9.4
1995 Male, age 72, unknown 8.5
2587 Male, age 74, left hemisphere 6.9
Ventral tegmental area
nTPM: 24.0
1915 Female, age 42, unknown 53.5
2223 Female, age 72, unknown 37.4
2021 Male, age 53, unknown 20.1
1942 Male, age 51, unknown 17.6
2218 Male, age 76, both hemispheres 8.7
2410 Female, age 72, unknown 6.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1299.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1299.7
Samples: 139

Max nTPM: 4788.0
Min nTPM: 451.5
Std nTPM: 559.3
Median nTPM: 1188.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 4788.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 3424.9
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 2546.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 2490.2
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 2466.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 2449.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 2344.6
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 2273.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 2206.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 2168.8
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 2107.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 164.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 164.5
FF:10158-103A5 76 years, female 164.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 394.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 394.3
Samples: 4

Max nTPM: 579.7
Min nTPM: 286.2
Sample A Female 579.7
Sample B Female 371.5
Sample C Male 286.2
Sample D Male 339.8
Midbrain
nTPM: 380.9
Samples: 4

Max nTPM: 670.9
Min nTPM: 228.6
Sample A Female 670.9
Sample B Female 385.5
Sample C Male 238.6
Sample D Male 228.6
Periaqueductal gray
nTPM: 279.3
Samples: 3

Max nTPM: 304.5
Min nTPM: 261.2
Sample B Female 304.5
Sample C Male 272.3
Sample D Male 261.2
Superior colliculi
nTPM: 383.7
Samples: 4

Max nTPM: 521.8
Min nTPM: 292.7
Sample A Female 521.8
Sample B Female 394.3
Sample C Male 292.7
Sample D Male 325.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 548.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 548.6
Samples: 4

Max nTPM: 599.7
Min nTPM: 503.2
Sample A Male 599.7
Sample B Male 518.1
Sample C Female 503.2
Sample D Female 573.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 15.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 15.4
68563128 Antisense, RP_050125_01_B08, Mouse strain C57BL/6J (56 days, male) 15.4

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