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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1252.4
nTPM
Monaco:
122.9
nTPM
Schmiedel:
596.6
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
1252.4
HPA sample
nTPM
gdT-cell nTPM: 538.7
Samples: 6
Max nTPM: 708.0
Min nTPM: 332.6
P10809_1007
708.0
P10809_1022
503.1
P10809_1041
692.7
P10809_1060
332.6
P10809_1077
494.9
P10809_1098
500.7
MAIT T-cell nTPM: 880.4
Samples: 6
Max nTPM: 1043.1
Min nTPM: 590.4
P10809_1006
998.6
P10809_1024
1043.1
P10809_1043
1005.9
P10809_1062
590.4
P10809_1083
698.1
P10809_1097
946.3
Memory CD4 T-cell nTPM: 922.9
Samples: 6
Max nTPM: 1412.6
Min nTPM: 461.1
P10809_1014
1412.6
P10809_1026
938.2
P10809_1045
1147.2
P10809_1064
461.1
P10809_1086
644.9
P10809_1113
933.2
Memory CD8 T-cell nTPM: 672.6
Samples: 5
Max nTPM: 878.8
Min nTPM: 430.8
P10809_1012
878.8
P10809_1027
662.4
P10809_1046
738.8
P10809_1065
430.8
P10809_1111
652.4
Naive CD4 T-cell nTPM: 1252.4
Samples: 6
Max nTPM: 1661.7
Min nTPM: 764.3
P10809_1015
1486.3
P10809_1030
1532.6
P10809_1049
1661.7
P10809_1068
1045.3
P10809_1085
764.3
P10809_1112
1024.0
Naive CD8 T-cell nTPM: 1068.5
Samples: 6
Max nTPM: 1770.1
Min nTPM: 491.0
P10809_1016
1770.1
P10809_1031
1161.5
P10809_1050
1321.2
P10809_1069
570.8
P10809_1087
491.0
P10809_1110
1096.3
T-reg nTPM: 625.5
Samples: 6
Max nTPM: 809.6
Min nTPM: 304.9
P10809_1018
809.6
P10809_1037
764.7
P10809_1056
684.2
P10809_1075
304.9
P10809_1094
635.1
P10809_1106
554.2
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
122.9
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 87.2
Samples: 4
Max nTPM: 230.9
Min nTPM: 9.2
RHH5202_R3573
43.0
RHH5230_R3602
9.2
RHH5259_R3631
230.9
RHH5288_R3660
65.5
Effector memory CD8 T-cell nTPM: 66.9
Samples: 4
Max nTPM: 122.6
Min nTPM: 5.0
RHH5203_R3574
37.7
RHH5231_R3603
102.2
RHH5260_R3632
5.0
RHH5289_R3661
122.6
MAIT T-cell nTPM: 84.0
Samples: 4
Max nTPM: 163.2
Min nTPM: 51.5
RHH5233_R3605
163.2
RHH5205_R3576
51.5
RHH5262_R3634
65.3
RHH5297_R3663
56.0
Memory CD4 T-cell TFH nTPM: 83.2
Samples: 4
Max nTPM: 152.2
Min nTPM: 18.4
RHH5300_R3666
71.7
RHH5236_R3608
90.4
RHH5265_R3637
152.2
RHH5208_R3579
18.4
Memory CD4 T-cell Th1 nTPM: 34.0
Samples: 4
Max nTPM: 81.8
Min nTPM: 2.7
RHH5210_R3581
81.8
RHH5302_R3668
47.7
RHH5238_R3610
3.8
RHH5267_R3639
2.7
Memory CD4 T-cell Th1/Th17 nTPM: 96.6
Samples: 4
Max nTPM: 151.7
Min nTPM: 46.9
RHH5303_R3669
49.0
RHH5211_R3582
151.7
RHH5239_R3611
46.9
RHH5268_R3640
138.7
Memory CD4 T-cell Th17 nTPM: 98.2
Samples: 4
Max nTPM: 174.4
Min nTPM: 55.7
RHH5304_R3670
89.2
RHH5212_R3583
73.6
RHH5240_R3612
174.4
RHH5269_R3641
55.7
Memory CD4 T-cell Th2 nTPM: 53.2
Samples: 4
Max nTPM: 184.9
Min nTPM: 2.6
RHH5305_R3671
2.6
RHH5213_R3584
20.4
RHH5241_R3613
184.9
RHH5270_R3642
4.9
Naive CD4 T-cell nTPM: 52.7
Samples: 4
Max nTPM: 72.1
Min nTPM: 7.8
RHH5306_R3672
70.2
RHH5214_R3585
72.1
RHH5242_R3614
7.8
RHH5271_R3643
60.5
Naive CD8 T-cell nTPM: 78.0
Samples: 4
Max nTPM: 213.2
Min nTPM: 10.7
RHH5201_R3572
213.2
RHH5229_R3601
76.8
RHH5258_R3630
11.2
RHH5287_R3659
10.7
Non-Vd2 gdTCR nTPM: 82.9
Samples: 4
Max nTPM: 269.7
Min nTPM: 4.3
RHH5235_R3607
9.8
RHH5264_R3636
4.3
RHH5207_R3578
47.9
RHH5299_R3665
269.7
T-reg nTPM: 107.4
Samples: 4
Max nTPM: 241.9
Min nTPM: 19.5
RHH5301_R3667
241.9
RHH5237_R3609
84.9
RHH5266_R3638
83.2
RHH5209_R3580
19.5
Terminal effector memory CD4 T-cell nTPM: 50.8
Samples: 2
Max nTPM: 97.5
Min nTPM: 4.0
RHH5243_R3615
4.0
RHH5272_R3644
97.5
Terminal effector memory CD8 T-cell nTPM: 106.2
Samples: 4
Max nTPM: 191.8
Min nTPM: 1.7
RHH5232_R3604
1.7
RHH5204_R3575
191.8
RHH5261_R3633
129.8
RHH5296_R3662
101.4
Vd2 gdTCR nTPM: 122.9
Samples: 4
Max nTPM: 274.3
Min nTPM: 35.1
RHH5234_R3606
97.7
RHH5206_R3577
35.1
RHH5263_R3635
84.4
RHH5298_R3664
274.3
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
