BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:0.2 nTPM
HPA Brain:0.8 nTPM
GTEx:0.2 nTPM
Pig:0.1 nTPM

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

CAUDATE - Antibody stainingi
Antibody HPA010664
Glial cells Not detected
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 0.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 0.5
2288 Male, age 75, left hemisphere 0.8
2481 Female, age 94, left hemisphere 0.6
2846 Female, age 79, unknown 0.6
1781 Male, age 74, unknown 0.4
1854 Male, age 80, left hemisphere 0.4
2289 Male, age 61, right hemisphere 0.4
1857 Female, age 85, left hemisphere 0.3
2290 Female, age 72, unknown 0.3
Globus pallidus, externus
nTPM: 0.7
2567 Female, age 72, unknown 1.2
2646 Male, age 61, right hemisphere 0.8
2395 Male, age 75, both hemispheres 0.7
1996 Male, age 80, right hemisphere 0.6
2772 Female, age 79, unknown 0.5
Globus pallidus, internus
nTPM: 0.8
2111 Female, age 85, right hemisphere 1.1
2566 Female, age 72, unknown 1.1
2287 Male, age 75, right hemisphere 0.9
2778 Female, age 91, both hemispheres 0.8
2483 Female, age 94, right hemisphere 0.7
1818 Male, age 74, unknown 0.6
2037 Male, age 80, right hemisphere 0.6
Nucleus accumbens
nTPM: 0.6
2732 Male, age 80, right hemisphere 0.8
2391 Female, age 94, left hemisphere 0.7
2698 Female, age 72, unknown 0.7
1783 Male, age 74, unknown 0.6
2286 Male, age 75, left hemisphere 0.6
2824 Male, age 61, right hemisphere 0.6
1856 Female, age 91, right hemisphere 0.5
1806 Female, age 85, left hemisphere 0.4
Nucleus basalis of Meynert
nTPM: 0.7
2569 Male, age 61, both hemispheres 0.9
2393 Male, age 80, right hemisphere 0.6
2484 Female, age 94, left hemisphere 0.6
2821 Male, age 75, both hemispheres 0.6
Nucleus of the diagonal band
nTPM: 0.5
2775 Male, age 80, right hemisphere 0.6
1979 Male, age 74, unknown 0.5
2195 Female, age 85, both hemispheres 0.5
1812 Female, age 91, both hemispheres 0.4
2029 Male, age 61, right hemisphere 0.4
Putamen
nTPM: 0.7
2647 Male, age 75, left hemisphere 0.9
1829 Male, age 74, unknown 0.8
1838 Male, age 80, right hemisphere 0.8
2466 Female, age 79, unknown 0.6
1937 Female, age 91, right hemisphere 0.5
2482 Female, age 94, left hemisphere 0.5
2489 Female, age 72, unknown 0.5
Septal nuclei
nTPM: 0.6
2199 Male, age 80, right hemisphere 0.8
2059 Female, age 85, both hemispheres 0.7
2394 Male, age 61, left hemisphere 0.7
1960 Male, age 74, unknown 0.6
2009 Female, age 91, both hemispheres 0.6
2629 Female, age 94, right hemisphere 0.5
2031 Female, age 72, unknown 0.4
Stria terminalis, bed nucleus
nTPM: 0.7
2201 Male, age 74, unknown 0.8
1974 Female, age 91, both hemispheres 0.6
2486 Female, age 94, both hemispheres 0.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 0.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 0.1
Samples: 246

Max nTPM: 0.7
Min nTPM: 0.0
Std nTPM: 0.1
Median nTPM: 0.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 0.7
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 0.7
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 0.5
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 0.5
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 0.5
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 0.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 0.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 0.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 0.3
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 0.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 0.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 0.1
Samples: 246

Max nTPM: 0.5
Min nTPM: 0.0
Std nTPM: 0.1
Median nTPM: 0.0
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 0.5
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 0.5
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 0.5
GTEX-RU72-0011-R6A-SM-2TF71 50-59 years, female 0.4
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 0.4
GTEX-1I1GQ-0011-R6b-SM-CE6SE 50-59 years, male 0.4
GTEX-11WQC-0011-R6a-SM-5BC77 60-69 years, male 0.3
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 0.3
GTEX-13FHP-0011-R6b-SM-5LZY6 50-59 years, male 0.3
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 0.3
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 0.3
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Brain - Putamen (basal ganglia)
Average nTPM: 0.2
Samples: 205

Max nTPM: 1.0
Min nTPM: 0.0
Std nTPM: 0.1
Median nTPM: 0.1
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 1.0
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 0.6
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 0.6
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 0.6
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 0.5
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 0.5
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 0.5
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 0.5
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 0.5
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 0.4
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 0.4
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BASAL GANGLIA - Pig RNA-seqi
Average nTPM 0.1
Pig sample Sample description nTPM
Caudate
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0
Putamen
nTPM: 0.0
Samples: 4

Max nTPM: 0.1
Min nTPM: 0.0
Sample A Female 0.1
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0
Septum
nTPM: 0.1
Samples: 4

Max nTPM: 0.3
Min nTPM: 0.0
Sample A Female 0.1
Sample B Female 0.1
Sample C Male 0.3
Sample D Male 0.0
Ventral pallidum
nTPM: 0.2
Samples: 4

Max nTPM: 0.3
Min nTPM: 0.0
Sample A Female 0.1
Sample B Female 0.2
Sample C Male 0.3
Sample D Male 0.0

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