HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:23.7 nTPM
HPA Brain:34.5 nTPM
GTEx:23.7 nTPM
FANTOM5:23.6 Scaled Tags Per Million
Pig:70.4 nTPM
Mouse:74.7 nTPM
Allen mouse:2.5 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA052718
Glial cells Low
Neuronal cells High



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 34.5
Sample id Sample description nTPM
Hippocampus
nTPM: 27.7
1898 Male, age 80, left hemisphere 32.8
2148 Female, age 91, left hemisphere 30.5
1855 Male, age 76, left hemisphere 29.6
1911 Female, age 85, right hemisphere 26.2
2621 Female, age 67, right hemisphere 24.5
2529 Female, age 94, left hemisphere 22.4
Dentate gyrus
nTPM: 30.5
1927 Female, age 91, both hemispheres 34.0
2531 Female, age 67, both hemispheres 32.2
2530 Female, age 94, left hemisphere 30.8
2010 Male, age 76, both hemispheres 30.3
2246 Female, age 85, both hemispheres 29.5
2528 Male, age 74, both hemispheres 26.1
Entorhinal gyrus
nTPM: 29.6
2613 Female, age 94, left hemisphere 33.1
2764 Male, age 80, right hemisphere 31.9
1938 Female, age 85, left hemisphere 30.8
2686 Male, age 75, right hemisphere 30.6
1787 Male, age 76, left hemisphere 30.1
2117 Female, age 91, right hemisphere 21.3
Hippocampus, CA1
nTPM: 31.9
2749 Male, age 80, left hemisphere 43.8
2045 Male, age 76, both hemispheres 32.5
1873 Female, age 85, both hemispheres 31.9
2527 Male, age 74, both hemispheres 27.0
2082 Female, age 91, right hemisphere 24.2
Hippocampus, CA2
nTPM: 28.5
1963 Male, age 80, left hemisphere 35.2
1892 Male, age 76, both hemispheres 33.1
2437 Female, age 94, left hemisphere 26.4
2113 Female, age 91, right hemisphere 26.3
1940 Female, age 85, left hemisphere 26.0
2249 Male, age 74, both hemispheres 24.0
Hippocampus, CA3
nTPM: 30.7
2620 Female, age 94, left hemisphere 35.8
2137 Male, age 80, left hemisphere 33.9
2861 Female, age 67, both hemispheres 33.5
1867 Male, age 76, both hemispheres 28.0
1891 Female, age 85, both hemispheres 26.8
2436 Male, age 74, both hemispheres 26.1
Parahippocampal cortex
nTPM: 30.1
2693 Female, age 94, both hemispheres 34.5
1850 Male, age 80, both hemispheres 33.9
2250 Female, age 67, right hemisphere 31.1
1933 Female, age 85, both hemispheres 30.7
2622 Female, age 67, right hemisphere 29.9
2245 Female, age 91, both hemispheres 29.5
2692 Male, age 74, both hemispheres 29.1
2532 Female, age 72, left hemisphere 28.5
1990 Female, age 91, right hemisphere 27.7
2018 Male, age 76, both hemispheres 26.2
Perirhinal gyrus
nTPM: 34.5
1847 Female, age 91, left hemisphere 38.4
1794 Male, age 80, right hemisphere 35.1
2848 Male, age 76, right hemisphere 34.1
1841 Female, age 85, right hemisphere 33.2
2521 Female, age 94, right hemisphere 31.8
Subiculum
nTPM: 25.2
1977 Female, age 85, both hemispheres 30.2
2619 Male, age 74, both hemispheres 27.6
1901 Male, age 80, both hemispheres 26.5
2438 Female, age 94, left hemisphere 24.7
2729 Female, age 91, right hemisphere 24.0
2042 Male, age 76, both hemispheres 18.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 23.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 23.7
Samples: 197

Max nTPM: 63.4
Min nTPM: 7.4
Std nTPM: 8.9
Median nTPM: 23.9
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 63.4
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 53.3
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 49.6
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 41.6
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 40.8
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 40.2
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 39.8
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 39.3
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 38.6
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 37.9
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 37.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 23.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 23.6
FF:10169-103B7 60 years, female 30.1
FF:10153-102I9 76 years, female 17.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 70.4
Pig sample Sample description nTPM
Subiculum
nTPM: 70.4
Samples: 4

Max nTPM: 106.1
Min nTPM: 45.6
Sample A Female 106.1
Sample B Female 73.1
Sample C Male 56.7
Sample D Male 45.6
Dorsal hippocampus
nTPM: 68.8
Samples: 4

Max nTPM: 96.4
Min nTPM: 42.7
Sample A Female 96.4
Sample B Female 78.4
Sample C Male 57.8
Sample D Male 42.7
Entorhinal cortex
nTPM: 68.2
Samples: 4

Max nTPM: 80.8
Min nTPM: 48.0
Sample A Female 79.3
Sample B Female 80.8
Sample C Male 64.7
Sample D Male 48.0
Ventral hippocampus
nTPM: 66.9
Samples: 4

Max nTPM: 72.5
Min nTPM: 57.8
Sample A Female 72.5
Sample B Female 57.8
Sample C Male 72.3
Sample D Male 64.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 74.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 74.7
Samples: 4

Max nTPM: 84.2
Min nTPM: 67.7
Sample A Male 67.7
Sample B Male 71.7
Sample C Female 75.3
Sample D Female 84.2
Hippocampal formation
nTPM: 66.9
Samples: 4

Max nTPM: 71.6
Min nTPM: 61.4
Sample A Male 71.6
Sample B Male 61.4
Sample C Female 71.3
Sample D Female 63.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 2.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.5
68844062 Antisense, RP_050217_02_G11, Mouse strain C57BL/6J (56 days, male) 2.5

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