MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:25.6 nTPM
HPA Brain:10.2 nTPM
GTEx:25.6 nTPM
FANTOM5:43.7 Scaled Tags Per Million
Pig:9.4 nTPM
Mouse:9.8 nTPM

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 10.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 8.8
2586 Male, age 75, left hemisphere 12.5
2019 Male, age 18, unknown 11.4
2828 Female, age 72, unknown 10.2
1830 Male, age 51, unknown 8.8
2411 Female, age 72, unknown 8.8
1827 Male, age 72, unknown 7.9
2219 Male, age 76, both hemispheres 7.8
1870 Female, age 42, unknown 7.5
1833 Male, age 53, unknown 7.3
2666 Male, age 74, left hemisphere 5.7
Dorsal raphe nucleus
nTPM: 7.5
2016 Female, age 72, unknown 8.5
2047 Male, age 72, unknown 7.8
1828 Male, age 53, unknown 7.7
2298 Female, age 72, unknown 7.2
2750 Male, age 76, both hemispheres 6.4
Inferior colliculus
nTPM: 8.5
2849 Male, age 72, unknown 10.3
2097 Female, age 72, unknown 8.7
1848 Female, age 42, unknown 8.0
1890 Male, age 53, unknown 7.2
Median raphe nucleus
nTPM: 7.0
2220 Male, age 76, midline 7.0
Periaquaductal grey, anterior
nTPM: 9.7
2502 Female, age 75, unknown 11.6
1795 Male, age 51, unknown 9.5
1947 Male, age 18, unknown 8.1
Periaquaductal grey, dorsal
nTPM: 8.1
2850 Male, age 76, both hemispheres 8.5
2464 Female, age 72, unknown 8.3
1831 Male, age 72, unknown 7.8
1840 Male, age 53, unknown 7.7
Periaquaductal grey, lateral
nTPM: 7.8
2272 Male, age 74, both hemispheres 8.2
2140 Male, age 76, both hemispheres 7.7
2053 Male, age 18, unknown 7.5
Pretectal area
nTPM: 10.2
2407 Male, age 75, both hemispheres 13.3
2667 Female, age 75, unknown 12.3
2316 Male, age 76, right hemisphere 12.0
2007 Male, age 72, unknown 10.8
1816 Male, age 51, unknown 10.5
1944 Female, age 72, unknown 10.1
1815 Male, age 53, unknown 9.8
1817 Female, age 42, unknown 9.6
2273 Male, age 74, both hemispheres 9.0
2825 Male, age 18, unknown 7.2
2224 Female, age 72, unknown 7.1
Red nucleus
nTPM: 8.9
2584 Male, age 75, left hemisphere 11.2
2588 Male, age 74, left hemisphere 10.9
1865 Male, age 51, unknown 10.2
2785 Male, age 18, unknown 10.1
2823 Male, age 76, right hemisphere 10.0
2769 Male, age 72, unknown 9.7
1904 Male, age 53, unknown 9.3
2503 Female, age 72, unknown 9.2
1954 Female, age 42, unknown 8.1
1821 Female, age 72, unknown 6.5
2227 Male, age 72, unknown 6.5
2725 Female, age 75, unknown 4.7
Substantia nigra
nTPM: 6.7
2583 Male, age 75, right hemisphere 8.8
1941 Male, age 53, unknown 8.4
2699 Male, age 18, unknown 7.7
1889 Female, age 72, unknown 7.1
2590 Female, age 75, unknown 6.7
1851 Male, age 51, unknown 6.3
2241 Male, age 72, unknown 6.2
2665 Male, age 74, both hemispheres 6.1
2409 Female, age 72, unknown 5.5
1916 Female, age 42, unknown 4.6
Superior colliculus
nTPM: 9.2
2668 Female, age 75, unknown 10.9
1913 Female, age 42, unknown 10.7
2664 Male, age 75, both hemispheres 10.2
1895 Male, age 76, right hemisphere 9.8
2087 Female, age 72, unknown 9.7
1995 Male, age 72, unknown 9.4
2261 Male, age 18, unknown 8.7
1839 Male, age 51, unknown 8.3
1796 Male, age 53, unknown 8.0
2587 Male, age 74, left hemisphere 6.2
Ventral tegmental area
nTPM: 5.7
2021 Male, age 53, unknown 7.0
2410 Female, age 72, unknown 6.2
2218 Male, age 76, both hemispheres 5.7
2223 Female, age 72, unknown 5.3
1942 Male, age 51, unknown 5.2
1915 Female, age 42, unknown 5.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 25.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 25.6
Samples: 139

Max nTPM: 81.8
Min nTPM: 8.0
Std nTPM: 12.3
Median nTPM: 22.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 81.8
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 73.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 64.9
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 63.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 57.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 57.2
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 51.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 49.4
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 48.2
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 45.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 44.2
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 43.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 43.7
FF:10158-103A5 76 years, female 43.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 9.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 9.1
Samples: 4

Max nTPM: 11.2
Min nTPM: 7.8
Sample A Female 8.6
Sample B Female 7.8
Sample C Male 8.9
Sample D Male 11.2
Midbrain
nTPM: 9.4
Samples: 4

Max nTPM: 11.1
Min nTPM: 7.7
Sample A Female 9.6
Sample B Female 9.2
Sample C Male 7.7
Sample D Male 11.1
Periaqueductal gray
nTPM: 9.3
Samples: 3

Max nTPM: 9.4
Min nTPM: 9.2
Sample B Female 9.2
Sample C Male 9.2
Sample D Male 9.4
Superior colliculi
nTPM: 8.6
Samples: 4

Max nTPM: 8.8
Min nTPM: 8.4
Sample A Female 8.8
Sample B Female 8.4
Sample C Male 8.5
Sample D Male 8.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 9.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.8
Samples: 4

Max nTPM: 12.1
Min nTPM: 8.6
Sample A Male 12.1
Sample B Male 9.2
Sample C Female 9.4
Sample D Female 8.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org