MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:22.4 nTPM
HPA Brain:23.9 nTPM
GTEx:22.4 nTPM
FANTOM5:1.9 Scaled Tags Per Million
Pig:28.2 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 23.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.6
2219 Male, age 76, both hemispheres 22.3
2411 Female, age 72, unknown 20.2
1827 Male, age 72, unknown 19.8
2586 Male, age 75, left hemisphere 19.3
2019 Male, age 18, unknown 16.7
1870 Female, age 42, unknown 14.1
2828 Female, age 72, unknown 14.1
2666 Male, age 74, left hemisphere 13.7
1833 Male, age 53, unknown 13.3
1830 Male, age 51, unknown 12.1
Dorsal raphe nucleus
nTPM: 22.8
2298 Female, age 72, unknown 38.3
2047 Male, age 72, unknown 23.1
2750 Male, age 76, both hemispheres 19.0
1828 Male, age 53, unknown 17.7
2016 Female, age 72, unknown 15.6
Inferior colliculus
nTPM: 15.4
2097 Female, age 72, unknown 20.4
1890 Male, age 53, unknown 15.1
2849 Male, age 72, unknown 13.3
1848 Female, age 42, unknown 12.8
Median raphe nucleus
nTPM: 23.9
2220 Male, age 76, midline 23.9
Periaquaductal grey, anterior
nTPM: 18.6
1795 Male, age 51, unknown 22.0
1947 Male, age 18, unknown 17.6
2502 Female, age 75, unknown 16.3
Periaquaductal grey, dorsal
nTPM: 17.7
1840 Male, age 53, unknown 20.5
2850 Male, age 76, both hemispheres 18.9
1831 Male, age 72, unknown 17.0
2464 Female, age 72, unknown 14.2
Periaquaductal grey, lateral
nTPM: 16.7
2272 Male, age 74, both hemispheres 20.2
2140 Male, age 76, both hemispheres 16.5
2053 Male, age 18, unknown 13.5
Pretectal area
nTPM: 18.6
2224 Female, age 72, unknown 25.5
2273 Male, age 74, both hemispheres 23.5
2007 Male, age 72, unknown 22.5
1817 Female, age 42, unknown 19.5
1816 Male, age 51, unknown 18.8
2825 Male, age 18, unknown 18.7
1815 Male, age 53, unknown 18.6
1944 Female, age 72, unknown 16.8
2667 Female, age 75, unknown 14.9
2407 Male, age 75, both hemispheres 14.0
2316 Male, age 76, right hemisphere 12.5
Red nucleus
nTPM: 10.5
2785 Male, age 18, unknown 14.3
1821 Female, age 72, unknown 13.1
2725 Female, age 75, unknown 12.3
2584 Male, age 75, left hemisphere 11.5
1954 Female, age 42, unknown 11.0
2227 Male, age 72, unknown 10.7
2769 Male, age 72, unknown 10.1
2823 Male, age 76, right hemisphere 9.9
1904 Male, age 53, unknown 9.0
2503 Female, age 72, unknown 8.3
1865 Male, age 51, unknown 8.2
2588 Male, age 74, left hemisphere 7.2
Substantia nigra
nTPM: 18.7
1916 Female, age 42, unknown 29.0
1851 Male, age 51, unknown 23.0
1941 Male, age 53, unknown 20.6
2241 Male, age 72, unknown 20.3
1889 Female, age 72, unknown 18.6
2665 Male, age 74, both hemispheres 16.9
2699 Male, age 18, unknown 16.3
2590 Female, age 75, unknown 15.6
2583 Male, age 75, right hemisphere 13.8
2409 Female, age 72, unknown 12.7
Superior colliculus
nTPM: 14.3
1796 Male, age 53, unknown 19.3
2668 Female, age 75, unknown 18.9
2664 Male, age 75, both hemispheres 17.4
2587 Male, age 74, left hemisphere 14.8
2087 Female, age 72, unknown 14.7
1895 Male, age 76, right hemisphere 14.0
2261 Male, age 18, unknown 13.7
1839 Male, age 51, unknown 13.6
1995 Male, age 72, unknown 8.7
1913 Female, age 42, unknown 8.2
Ventral tegmental area
nTPM: 21.0
1915 Female, age 42, unknown 23.8
2410 Female, age 72, unknown 23.2
1942 Male, age 51, unknown 22.5
2218 Male, age 76, both hemispheres 22.2
2021 Male, age 53, unknown 18.9
2223 Female, age 72, unknown 15.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 22.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 22.4
Samples: 139

Max nTPM: 80.5
Min nTPM: 5.3
Std nTPM: 12.9
Median nTPM: 20.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 80.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 58.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 55.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 55.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 54.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 51.9
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 50.5
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 47.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 44.3
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 44.0
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 43.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 1.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1.9
FF:10158-103A5 76 years, female 1.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 28.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 19.6
Samples: 4

Max nTPM: 30.7
Min nTPM: 6.2
Sample A Female 30.7
Sample B Female 19.1
Sample C Male 22.2
Sample D Male 6.2
Midbrain
nTPM: 28.2
Samples: 4

Max nTPM: 41.0
Min nTPM: 11.6
Sample A Female 11.6
Sample B Female 26.9
Sample C Male 41.0
Sample D Male 33.2
Periaqueductal gray
nTPM: 25.0
Samples: 3

Max nTPM: 29.4
Min nTPM: 20.6
Sample B Female 24.9
Sample C Male 29.4
Sample D Male 20.6
Superior colliculi
nTPM: 27.5
Samples: 4

Max nTPM: 34.6
Min nTPM: 19.2
Sample A Female 34.6
Sample B Female 19.2
Sample C Male 33.4
Sample D Male 22.8

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