MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:95.1 nTPM
HPA Brain:312.5 nTPM
GTEx:95.1 nTPM
FANTOM5:28.0 Scaled Tags Per Million
Pig:75.5 nTPM
Mouse:220.6 nTPM
Allen mouse:13.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 312.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 291.3
2586 Male, age 75, left hemisphere 355.2
2828 Female, age 72, unknown 309.4
2411 Female, age 72, unknown 306.8
1830 Male, age 51, unknown 298.8
1833 Male, age 53, unknown 296.3
1827 Male, age 72, unknown 295.1
2666 Male, age 74, left hemisphere 291.6
1870 Female, age 42, unknown 274.3
2019 Male, age 18, unknown 252.6
2219 Male, age 76, both hemispheres 232.9
Dorsal raphe nucleus
nTPM: 208.0
2750 Male, age 76, both hemispheres 292.3
2016 Female, age 72, unknown 201.4
1828 Male, age 53, unknown 186.8
2298 Female, age 72, unknown 184.3
2047 Male, age 72, unknown 175.2
Inferior colliculus
nTPM: 220.2
2849 Male, age 72, unknown 254.3
1848 Female, age 42, unknown 224.0
1890 Male, age 53, unknown 201.3
2097 Female, age 72, unknown 201.3
Median raphe nucleus
nTPM: 200.0
2220 Male, age 76, midline 200.0
Periaquaductal grey, anterior
nTPM: 312.5
1947 Male, age 18, unknown 333.1
2502 Female, age 75, unknown 326.8
1795 Male, age 51, unknown 277.7
Periaquaductal grey, dorsal
nTPM: 188.0
2464 Female, age 72, unknown 240.5
1840 Male, age 53, unknown 187.0
1831 Male, age 72, unknown 185.2
2850 Male, age 76, both hemispheres 139.4
Periaquaductal grey, lateral
nTPM: 193.3
2053 Male, age 18, unknown 228.6
2272 Male, age 74, both hemispheres 196.2
2140 Male, age 76, both hemispheres 155.2
Pretectal area
nTPM: 243.4
2407 Male, age 75, both hemispheres 316.3
1815 Male, age 53, unknown 288.9
2316 Male, age 76, right hemisphere 280.2
2007 Male, age 72, unknown 268.8
2825 Male, age 18, unknown 261.0
1816 Male, age 51, unknown 249.6
1817 Female, age 42, unknown 247.9
1944 Female, age 72, unknown 245.0
2224 Female, age 72, unknown 187.6
2667 Female, age 75, unknown 173.7
2273 Male, age 74, both hemispheres 158.1
Red nucleus
nTPM: 310.2
2584 Male, age 75, left hemisphere 363.9
2823 Male, age 76, right hemisphere 355.6
2725 Female, age 75, unknown 325.3
2588 Male, age 74, left hemisphere 323.3
1904 Male, age 53, unknown 319.8
1865 Male, age 51, unknown 318.1
2769 Male, age 72, unknown 302.3
2227 Male, age 72, unknown 298.3
2785 Male, age 18, unknown 294.1
2503 Female, age 72, unknown 293.9
1954 Female, age 42, unknown 265.9
1821 Female, age 72, unknown 261.5
Substantia nigra
nTPM: 262.0
2590 Female, age 75, unknown 335.5
2583 Male, age 75, right hemisphere 319.7
1851 Male, age 51, unknown 271.4
2409 Female, age 72, unknown 262.0
1941 Male, age 53, unknown 254.7
2665 Male, age 74, both hemispheres 252.4
1916 Female, age 42, unknown 248.1
1889 Female, age 72, unknown 242.8
2241 Male, age 72, unknown 217.9
2699 Male, age 18, unknown 215.2
Superior colliculus
nTPM: 281.6
1895 Male, age 76, right hemisphere 319.7
1995 Male, age 72, unknown 307.7
1913 Female, age 42, unknown 294.0
1796 Male, age 53, unknown 293.2
2261 Male, age 18, unknown 290.4
2664 Male, age 75, both hemispheres 282.2
1839 Male, age 51, unknown 271.1
2668 Female, age 75, unknown 269.1
2587 Male, age 74, left hemisphere 248.9
2087 Female, age 72, unknown 239.3
Ventral tegmental area
nTPM: 238.4
2410 Female, age 72, unknown 292.4
2218 Male, age 76, both hemispheres 244.8
1942 Male, age 51, unknown 236.1
1915 Female, age 42, unknown 233.3
2223 Female, age 72, unknown 212.3
2021 Male, age 53, unknown 211.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 95.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 95.1
Samples: 139

Max nTPM: 301.2
Min nTPM: 26.1
Std nTPM: 42.7
Median nTPM: 84.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 301.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 271.9
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 222.0
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 220.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 182.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 179.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 163.0
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 161.7
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 154.9
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 148.4
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 146.7
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 28.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 28.0
FF:10158-103A5 76 years, female 28.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 75.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 65.4
Samples: 4

Max nTPM: 81.3
Min nTPM: 40.6
Sample A Female 81.3
Sample B Female 40.6
Sample C Male 64.9
Sample D Male 74.9
Midbrain
nTPM: 75.5
Samples: 4

Max nTPM: 86.5
Min nTPM: 68.4
Sample A Female 76.4
Sample B Female 70.6
Sample C Male 86.5
Sample D Male 68.4
Periaqueductal gray
nTPM: 64.0
Samples: 3

Max nTPM: 68.2
Min nTPM: 60.6
Sample B Female 68.2
Sample C Male 63.2
Sample D Male 60.6
Superior colliculi
nTPM: 67.1
Samples: 4

Max nTPM: 82.5
Min nTPM: 33.4
Sample A Female 75.5
Sample B Female 33.4
Sample C Male 76.9
Sample D Male 82.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 220.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 220.6
Samples: 4

Max nTPM: 231.4
Min nTPM: 208.8
Sample A Male 208.8
Sample B Male 219.0
Sample C Female 231.4
Sample D Female 223.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 13.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 13.3
74724775 Antisense, RP_060220_04_B09, Mouse strain C57BL/6J (56 days, male) 14.2
69407355 Antisense, RP_050414_01_D12, Mouse strain C57BL/6J (56 days, male) 12.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org