MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:117.5 nTPM
HPA Brain:47.7 nTPM
GTEx:117.5 nTPM
FANTOM5:14.5 Scaled Tags Per Million
Pig:72.7 nTPM
Mouse:20.4 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 47.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 27.6
2586 Male, age 75, left hemisphere 47.4
2019 Male, age 18, unknown 30.6
2828 Female, age 72, unknown 27.6
2411 Female, age 72, unknown 27.0
1827 Male, age 72, unknown 26.5
1830 Male, age 51, unknown 25.6
1833 Male, age 53, unknown 25.3
2666 Male, age 74, left hemisphere 23.1
2219 Male, age 76, both hemispheres 21.7
1870 Female, age 42, unknown 21.3
Dorsal raphe nucleus
nTPM: 31.0
2298 Female, age 72, unknown 36.2
2047 Male, age 72, unknown 36.0
1828 Male, age 53, unknown 29.6
2750 Male, age 76, both hemispheres 27.2
2016 Female, age 72, unknown 25.8
Inferior colliculus
nTPM: 36.8
1848 Female, age 42, unknown 55.5
1890 Male, age 53, unknown 32.7
2097 Female, age 72, unknown 30.2
2849 Male, age 72, unknown 28.9
Median raphe nucleus
nTPM: 27.8
2220 Male, age 76, midline 27.8
Periaquaductal grey, anterior
nTPM: 24.7
2502 Female, age 75, unknown 30.0
1947 Male, age 18, unknown 23.5
1795 Male, age 51, unknown 20.7
Periaquaductal grey, dorsal
nTPM: 25.9
1840 Male, age 53, unknown 30.9
2464 Female, age 72, unknown 28.6
1831 Male, age 72, unknown 23.9
2850 Male, age 76, both hemispheres 20.1
Periaquaductal grey, lateral
nTPM: 21.8
2053 Male, age 18, unknown 30.7
2272 Male, age 74, both hemispheres 18.5
2140 Male, age 76, both hemispheres 16.3
Pretectal area
nTPM: 29.7
1817 Female, age 42, unknown 42.4
1816 Male, age 51, unknown 36.5
2273 Male, age 74, both hemispheres 36.5
2407 Male, age 75, both hemispheres 32.6
2667 Female, age 75, unknown 31.8
1944 Female, age 72, unknown 27.7
2007 Male, age 72, unknown 26.2
2316 Male, age 76, right hemisphere 25.6
2825 Male, age 18, unknown 24.5
1815 Male, age 53, unknown 21.9
2224 Female, age 72, unknown 21.2
Red nucleus
nTPM: 34.0
1821 Female, age 72, unknown 49.8
1954 Female, age 42, unknown 45.8
2227 Male, age 72, unknown 37.9
2769 Male, age 72, unknown 37.7
2588 Male, age 74, left hemisphere 35.2
2503 Female, age 72, unknown 35.0
1865 Male, age 51, unknown 33.3
1904 Male, age 53, unknown 31.2
2823 Male, age 76, right hemisphere 26.8
2785 Male, age 18, unknown 26.2
2725 Female, age 75, unknown 26.0
2584 Male, age 75, left hemisphere 23.3
Substantia nigra
nTPM: 45.5
1941 Male, age 53, unknown 70.5
2665 Male, age 74, both hemispheres 53.6
1916 Female, age 42, unknown 50.3
2241 Male, age 72, unknown 49.6
2699 Male, age 18, unknown 48.2
1889 Female, age 72, unknown 39.3
1851 Male, age 51, unknown 38.5
2583 Male, age 75, right hemisphere 36.9
2409 Female, age 72, unknown 35.9
2590 Female, age 75, unknown 32.6
Superior colliculus
nTPM: 33.0
2668 Female, age 75, unknown 42.4
2664 Male, age 75, both hemispheres 39.2
1839 Male, age 51, unknown 37.0
1796 Male, age 53, unknown 35.8
2587 Male, age 74, left hemisphere 34.4
2087 Female, age 72, unknown 32.5
1995 Male, age 72, unknown 28.3
2261 Male, age 18, unknown 28.2
1895 Male, age 76, right hemisphere 27.0
1913 Female, age 42, unknown 25.2
Ventral tegmental area
nTPM: 47.7
2223 Female, age 72, unknown 113.0
1942 Male, age 51, unknown 41.8
1915 Female, age 42, unknown 36.2
2410 Female, age 72, unknown 36.0
2021 Male, age 53, unknown 33.4
2218 Male, age 76, both hemispheres 25.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 117.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 117.5
Samples: 139

Max nTPM: 566.7
Min nTPM: 18.1
Std nTPM: 76.4
Median nTPM: 100.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 566.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 464.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 367.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 338.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 223.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 215.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 207.6
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 206.0
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 205.9
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 204.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 200.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 14.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 14.5
FF:10158-103A5 76 years, female 14.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 72.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 69.0
Samples: 4

Max nTPM: 90.4
Min nTPM: 50.9
Sample A Female 90.4
Sample B Female 74.8
Sample C Male 50.9
Sample D Male 59.8
Midbrain
nTPM: 72.7
Samples: 4

Max nTPM: 99.1
Min nTPM: 41.3
Sample A Female 99.1
Sample B Female 98.1
Sample C Male 41.3
Sample D Male 52.1
Periaqueductal gray
nTPM: 58.4
Samples: 3

Max nTPM: 71.6
Min nTPM: 48.2
Sample B Female 71.6
Sample C Male 48.2
Sample D Male 55.5
Superior colliculi
nTPM: 67.7
Samples: 4

Max nTPM: 85.5
Min nTPM: 51.4
Sample A Female 67.7
Sample B Female 85.5
Sample C Male 51.4
Sample D Male 66.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 20.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 20.4
Samples: 4

Max nTPM: 26.3
Min nTPM: 16.0
Sample A Male 26.3
Sample B Male 20.2
Sample C Female 16.0
Sample D Female 19.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
79556716 Antisense, RP_071204_01_E01, Mouse strain C57BL/6J (56 days, male) 0.2
79670592 Antisense, RP_071204_01_E01, Mouse strain C57BL/6J (56 days, male) 0.2
2298 Antisense, RP_040604_01_D02, Mouse strain C57BL/6J (56 days, male) 0.1

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