MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:47.7 nTPM
HPA Brain:87.9 nTPM
GTEx:47.7 nTPM
FANTOM5:23.4 Scaled Tags Per Million
Pig:39.7 nTPM
Mouse:41.9 nTPM
Allen mouse:9.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 87.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 56.9
2586 Male, age 75, left hemisphere 68.6
1827 Male, age 72, unknown 66.0
2019 Male, age 18, unknown 63.0
2411 Female, age 72, unknown 58.6
2219 Male, age 76, both hemispheres 57.0
2666 Male, age 74, left hemisphere 53.2
1870 Female, age 42, unknown 51.4
1830 Male, age 51, unknown 50.5
2828 Female, age 72, unknown 50.4
1833 Male, age 53, unknown 50.3
Dorsal raphe nucleus
nTPM: 69.8
2298 Female, age 72, unknown 82.0
2047 Male, age 72, unknown 76.6
1828 Male, age 53, unknown 67.9
2750 Male, age 76, both hemispheres 65.1
2016 Female, age 72, unknown 57.2
Inferior colliculus
nTPM: 60.5
2097 Female, age 72, unknown 66.6
2849 Male, age 72, unknown 61.9
1848 Female, age 42, unknown 58.5
1890 Male, age 53, unknown 54.9
Median raphe nucleus
nTPM: 87.9
2220 Male, age 76, midline 87.9
Periaquaductal grey, anterior
nTPM: 78.2
1795 Male, age 51, unknown 78.8
2502 Female, age 75, unknown 78.4
1947 Male, age 18, unknown 77.2
Periaquaductal grey, dorsal
nTPM: 64.2
2850 Male, age 76, both hemispheres 72.6
1840 Male, age 53, unknown 68.2
1831 Male, age 72, unknown 59.3
2464 Female, age 72, unknown 56.7
Periaquaductal grey, lateral
nTPM: 74.4
2272 Male, age 74, both hemispheres 98.6
2140 Male, age 76, both hemispheres 65.0
2053 Male, age 18, unknown 59.5
Pretectal area
nTPM: 67.4
2273 Male, age 74, both hemispheres 93.7
1816 Male, age 51, unknown 77.8
1944 Female, age 72, unknown 74.9
2224 Female, age 72, unknown 73.0
2007 Male, age 72, unknown 72.8
1817 Female, age 42, unknown 65.8
2825 Male, age 18, unknown 63.7
2407 Male, age 75, both hemispheres 61.3
1815 Male, age 53, unknown 60.5
2667 Female, age 75, unknown 53.9
2316 Male, age 76, right hemisphere 43.6
Red nucleus
nTPM: 48.3
2584 Male, age 75, left hemisphere 57.4
2785 Male, age 18, unknown 56.8
1821 Female, age 72, unknown 54.0
2725 Female, age 75, unknown 51.0
2588 Male, age 74, left hemisphere 49.5
2227 Male, age 72, unknown 47.8
2769 Male, age 72, unknown 47.2
1865 Male, age 51, unknown 45.4
1954 Female, age 42, unknown 45.2
1904 Male, age 53, unknown 42.4
2823 Male, age 76, right hemisphere 41.9
2503 Female, age 72, unknown 41.3
Substantia nigra
nTPM: 63.3
1941 Male, age 53, unknown 97.0
1916 Female, age 42, unknown 74.9
2241 Male, age 72, unknown 67.5
2590 Female, age 75, unknown 65.2
1851 Male, age 51, unknown 64.3
1889 Female, age 72, unknown 63.5
2665 Male, age 74, both hemispheres 53.2
2583 Male, age 75, right hemisphere 50.9
2699 Male, age 18, unknown 49.3
2409 Female, age 72, unknown 46.9
Superior colliculus
nTPM: 59.3
2261 Male, age 18, unknown 71.3
2664 Male, age 75, both hemispheres 70.6
2587 Male, age 74, left hemisphere 65.9
2668 Female, age 75, unknown 63.8
1796 Male, age 53, unknown 62.4
2087 Female, age 72, unknown 60.9
1839 Male, age 51, unknown 58.4
1895 Male, age 76, right hemisphere 58.3
1913 Female, age 42, unknown 41.3
1995 Male, age 72, unknown 40.3
Ventral tegmental area
nTPM: 61.4
2218 Male, age 76, both hemispheres 68.6
1915 Female, age 42, unknown 64.1
2223 Female, age 72, unknown 62.0
2410 Female, age 72, unknown 61.7
1942 Male, age 51, unknown 58.8
2021 Male, age 53, unknown 53.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 47.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 47.7
Samples: 139

Max nTPM: 168.8
Min nTPM: 26.7
Std nTPM: 17.6
Median nTPM: 45.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 168.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 111.4
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 99.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 82.9
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 81.6
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 73.0
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 72.6
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 71.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 70.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 70.2
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 68.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 23.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 23.4
FF:10158-103A5 76 years, female 23.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 39.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 31.9
Samples: 4

Max nTPM: 49.6
Min nTPM: 16.3
Sample A Female 49.6
Sample B Female 22.4
Sample C Male 39.3
Sample D Male 16.3
Midbrain
nTPM: 35.6
Samples: 4

Max nTPM: 51.8
Min nTPM: 28.2
Sample A Female 28.6
Sample B Female 28.2
Sample C Male 51.8
Sample D Male 33.6
Periaqueductal gray
nTPM: 32.1
Samples: 3

Max nTPM: 41.4
Min nTPM: 27.2
Sample B Female 27.2
Sample C Male 41.4
Sample D Male 27.6
Superior colliculi
nTPM: 39.7
Samples: 4

Max nTPM: 56.3
Min nTPM: 25.9
Sample A Female 40.7
Sample B Female 25.9
Sample C Male 56.3
Sample D Male 36.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 41.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 41.9
Samples: 4

Max nTPM: 46.2
Min nTPM: 39.4
Sample A Male 39.4
Sample B Male 42.6
Sample C Female 46.2
Sample D Female 39.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 9.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.7
74580829 Antisense, RP_060215_02_A04, Mouse strain C57BL/6J (56 days, male) 9.7

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