HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:16.9 nTPM
HPA Brain:27.6 nTPM
GTEx:16.9 nTPM
FANTOM5:58.1 Scaled Tags Per Million
Mouse:51.3 nTPM
Allen mouse:1.0 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA035931Antibody HPA035932
Glial cells LowLow
Neuronal cells LowMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 27.6
Sample id Sample description nTPM
Hippocampus
nTPM: 27.3
1898 Male, age 80, left hemisphere 33.2
2529 Female, age 94, left hemisphere 31.5
1911 Female, age 85, right hemisphere 26.3
2148 Female, age 91, left hemisphere 25.4
1855 Male, age 76, left hemisphere 25.0
2621 Female, age 67, right hemisphere 22.2
Dentate gyrus
nTPM: 26.7
2528 Male, age 74, both hemispheres 34.7
2010 Male, age 76, both hemispheres 29.9
1927 Female, age 91, both hemispheres 27.2
2246 Female, age 85, both hemispheres 26.5
2530 Female, age 94, left hemisphere 22.8
2531 Female, age 67, both hemispheres 19.3
Entorhinal gyrus
nTPM: 24.6
2117 Female, age 91, right hemisphere 28.9
1938 Female, age 85, left hemisphere 27.2
2764 Male, age 80, right hemisphere 25.8
1787 Male, age 76, left hemisphere 24.2
2686 Male, age 75, right hemisphere 20.8
2613 Female, age 94, left hemisphere 20.5
Hippocampus, CA1
nTPM: 27.2
2749 Male, age 80, left hemisphere 34.1
1873 Female, age 85, both hemispheres 27.7
2527 Male, age 74, both hemispheres 27.0
2082 Female, age 91, right hemisphere 25.0
2045 Male, age 76, both hemispheres 22.2
Hippocampus, CA2
nTPM: 27.6
2249 Male, age 74, both hemispheres 35.5
1963 Male, age 80, left hemisphere 30.0
1892 Male, age 76, both hemispheres 29.7
2113 Female, age 91, right hemisphere 25.8
1940 Female, age 85, left hemisphere 22.5
2437 Female, age 94, left hemisphere 22.2
Hippocampus, CA3
nTPM: 26.1
1891 Female, age 85, both hemispheres 29.6
2137 Male, age 80, left hemisphere 29.2
2436 Male, age 74, both hemispheres 29.0
1867 Male, age 76, both hemispheres 27.7
2620 Female, age 94, left hemisphere 25.1
2861 Female, age 67, both hemispheres 16.2
Parahippocampal cortex
nTPM: 25.6
1850 Male, age 80, both hemispheres 28.9
1933 Female, age 85, both hemispheres 28.0
1990 Female, age 91, right hemisphere 27.0
2245 Female, age 91, both hemispheres 26.1
2692 Male, age 74, both hemispheres 25.5
2693 Female, age 94, both hemispheres 25.5
2250 Female, age 67, right hemisphere 24.6
2018 Male, age 76, both hemispheres 24.5
2532 Female, age 72, left hemisphere 23.4
2622 Female, age 67, right hemisphere 22.3
Perirhinal gyrus
nTPM: 27.6
1847 Female, age 91, left hemisphere 33.4
1794 Male, age 80, right hemisphere 29.2
1841 Female, age 85, right hemisphere 27.9
2521 Female, age 94, right hemisphere 25.9
2848 Male, age 76, right hemisphere 21.8
Subiculum
nTPM: 27.2
1901 Male, age 80, both hemispheres 29.3
1977 Female, age 85, both hemispheres 28.3
2729 Female, age 91, right hemisphere 27.3
2042 Male, age 76, both hemispheres 27.1
2619 Male, age 74, both hemispheres 26.7
2438 Female, age 94, left hemisphere 24.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 16.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 16.9
Samples: 197

Max nTPM: 30.8
Min nTPM: 5.9
Std nTPM: 3.7
Median nTPM: 16.7
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 30.8
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 27.4
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 27.2
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 26.1
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 26.1
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 24.7
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 24.0
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 23.8
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 23.8
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 23.5
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 23.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 58.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 58.1
FF:10153-102I9 76 years, female 59.2
FF:10169-103B7 60 years, female 57.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 51.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 41.7
Samples: 4

Max nTPM: 45.3
Min nTPM: 38.2
Sample A Male 41.3
Sample B Male 38.2
Sample C Female 45.3
Sample D Female 42.0
Hippocampal formation
nTPM: 51.3
Samples: 4

Max nTPM: 53.8
Min nTPM: 47.7
Sample A Male 53.8
Sample B Male 47.7
Sample C Female 52.9
Sample D Female 50.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.0
392932 Antisense, RP_040804_02_A03, Mouse strain C57BL/6J (56 days, male) 1.0

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