HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:89.0 nTPM
HPA Brain:94.6 nTPM
GTEx:89.0 nTPM
FANTOM5:72.0 Scaled Tags Per Million
Pig:114.9 nTPM
Mouse:29.1 nTPM
Allen mouse:8.4 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA043836
Glial cells Low
Neuronal cells Low



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 94.6
Sample id Sample description nTPM
Hippocampus
nTPM: 84.2
1898 Male, age 80, left hemisphere 92.4
2529 Female, age 94, left hemisphere 89.5
2621 Female, age 67, right hemisphere 84.2
2148 Female, age 91, left hemisphere 83.1
1855 Male, age 76, left hemisphere 82.6
1911 Female, age 85, right hemisphere 73.6
Dentate gyrus
nTPM: 82.5
2530 Female, age 94, left hemisphere 97.4
1927 Female, age 91, both hemispheres 89.7
2531 Female, age 67, both hemispheres 85.6
2246 Female, age 85, both hemispheres 76.2
2010 Male, age 76, both hemispheres 75.5
2528 Male, age 74, both hemispheres 70.7
Entorhinal gyrus
nTPM: 93.7
2613 Female, age 94, left hemisphere 106.2
2686 Male, age 75, right hemisphere 102.6
2764 Male, age 80, right hemisphere 101.5
1787 Male, age 76, left hemisphere 89.8
1938 Female, age 85, left hemisphere 89.2
2117 Female, age 91, right hemisphere 72.8
Hippocampus, CA1
nTPM: 84.3
2749 Male, age 80, left hemisphere 106.1
2082 Female, age 91, right hemisphere 81.0
1873 Female, age 85, both hemispheres 79.1
2045 Male, age 76, both hemispheres 78.1
2527 Male, age 74, both hemispheres 77.3
Hippocampus, CA2
nTPM: 83.9
1892 Male, age 76, both hemispheres 92.7
2437 Female, age 94, left hemisphere 91.0
1963 Male, age 80, left hemisphere 89.6
2113 Female, age 91, right hemisphere 79.5
1940 Female, age 85, left hemisphere 78.3
2249 Male, age 74, both hemispheres 72.5
Hippocampus, CA3
nTPM: 85.3
2620 Female, age 94, left hemisphere 103.3
2137 Male, age 80, left hemisphere 100.3
2861 Female, age 67, both hemispheres 93.4
1867 Male, age 76, both hemispheres 82.8
1891 Female, age 85, both hemispheres 69.0
2436 Male, age 74, both hemispheres 63.3
Parahippocampal cortex
nTPM: 88.9
2622 Female, age 67, right hemisphere 102.5
2245 Female, age 91, both hemispheres 94.5
1850 Male, age 80, both hemispheres 92.9
2532 Female, age 72, left hemisphere 91.7
2692 Male, age 74, both hemispheres 90.8
1990 Female, age 91, right hemisphere 88.5
1933 Female, age 85, both hemispheres 85.7
2693 Female, age 94, both hemispheres 85.6
2250 Female, age 67, right hemisphere 82.2
2018 Male, age 76, both hemispheres 74.3
Perirhinal gyrus
nTPM: 94.6
1794 Male, age 80, right hemisphere 112.8
1847 Female, age 91, left hemisphere 98.9
1841 Female, age 85, right hemisphere 96.9
2848 Male, age 76, right hemisphere 83.6
2521 Female, age 94, right hemisphere 80.7
Subiculum
nTPM: 83.0
2619 Male, age 74, both hemispheres 91.5
1977 Female, age 85, both hemispheres 87.9
1901 Male, age 80, both hemispheres 86.1
2438 Female, age 94, left hemisphere 85.7
2042 Male, age 76, both hemispheres 73.8
2729 Female, age 91, right hemisphere 72.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 89.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 89.0
Samples: 197

Max nTPM: 184.6
Min nTPM: 24.8
Std nTPM: 25.4
Median nTPM: 86.9
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 184.6
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 158.4
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 157.5
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 154.6
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 148.3
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 146.7
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 146.3
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 144.4
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 138.9
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 132.9
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 131.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 72.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 72.0
FF:10153-102I9 76 years, female 74.5
FF:10169-103B7 60 years, female 69.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 114.9
Pig sample Sample description nTPM
Subiculum
nTPM: 98.4
Samples: 4

Max nTPM: 123.8
Min nTPM: 85.1
Sample A Female 123.8
Sample B Female 90.6
Sample C Male 94.1
Sample D Male 85.1
Dorsal hippocampus
nTPM: 93.7
Samples: 4

Max nTPM: 102.5
Min nTPM: 80.4
Sample A Female 99.7
Sample B Female 92.2
Sample C Male 102.5
Sample D Male 80.4
Entorhinal cortex
nTPM: 114.9
Samples: 4

Max nTPM: 121.4
Min nTPM: 108.6
Sample A Female 108.6
Sample B Female 120.9
Sample C Male 121.4
Sample D Male 108.8
Ventral hippocampus
nTPM: 97.4
Samples: 4

Max nTPM: 114.6
Min nTPM: 82.6
Sample A Female 85.4
Sample B Female 82.6
Sample C Male 114.6
Sample D Male 106.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 29.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 29.1
Samples: 4

Max nTPM: 30.9
Min nTPM: 26.9
Sample A Male 29.8
Sample B Male 30.9
Sample C Female 28.8
Sample D Female 26.9
Hippocampal formation
nTPM: 26.9
Samples: 4

Max nTPM: 32.5
Min nTPM: 23.4
Sample A Male 32.5
Sample B Male 26.3
Sample C Female 23.4
Sample D Female 25.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 8.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 8.4
70598359 Antisense, RP_050407_04_D04, Mouse strain C57BL/6J (56 days, male) 10.4
74988737 Antisense, RP_060315_04_B05, Mouse strain C57BL/6J (56 days, male) 6.5

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