MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:84.5 nTPM
HPA Brain:95.1 nTPM
GTEx:84.5 nTPM
FANTOM5:56.7 Scaled Tags Per Million
Pig:91.4 nTPM
Mouse:29.6 nTPM
Allen mouse:7.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 95.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 86.8
2586 Male, age 75, left hemisphere 116.7
2666 Male, age 74, left hemisphere 102.0
1827 Male, age 72, unknown 97.1
2219 Male, age 76, both hemispheres 87.4
2828 Female, age 72, unknown 83.3
2411 Female, age 72, unknown 81.1
2019 Male, age 18, unknown 78.8
1833 Male, age 53, unknown 74.9
1830 Male, age 51, unknown 74.0
1870 Female, age 42, unknown 72.9
Dorsal raphe nucleus
nTPM: 83.0
2047 Male, age 72, unknown 94.5
2298 Female, age 72, unknown 88.0
1828 Male, age 53, unknown 85.6
2750 Male, age 76, both hemispheres 79.1
2016 Female, age 72, unknown 67.6
Inferior colliculus
nTPM: 76.1
2097 Female, age 72, unknown 83.6
2849 Male, age 72, unknown 76.0
1890 Male, age 53, unknown 74.1
1848 Female, age 42, unknown 70.7
Median raphe nucleus
nTPM: 87.1
2220 Male, age 76, midline 87.1
Periaquaductal grey, anterior
nTPM: 95.1
1795 Male, age 51, unknown 101.0
1947 Male, age 18, unknown 99.1
2502 Female, age 75, unknown 85.3
Periaquaductal grey, dorsal
nTPM: 73.7
1840 Male, age 53, unknown 77.9
2464 Female, age 72, unknown 75.7
2850 Male, age 76, both hemispheres 71.3
1831 Male, age 72, unknown 70.0
Periaquaductal grey, lateral
nTPM: 67.5
2140 Male, age 76, both hemispheres 71.0
2272 Male, age 74, both hemispheres 66.1
2053 Male, age 18, unknown 65.3
Pretectal area
nTPM: 83.4
1816 Male, age 51, unknown 105.8
2007 Male, age 72, unknown 105.5
1817 Female, age 42, unknown 99.3
1944 Female, age 72, unknown 90.1
1815 Male, age 53, unknown 89.2
2667 Female, age 75, unknown 81.9
2224 Female, age 72, unknown 74.9
2825 Male, age 18, unknown 74.5
2407 Male, age 75, both hemispheres 72.0
2273 Male, age 74, both hemispheres 63.1
2316 Male, age 76, right hemisphere 60.7
Red nucleus
nTPM: 77.3
2588 Male, age 74, left hemisphere 91.8
2584 Male, age 75, left hemisphere 90.9
2785 Male, age 18, unknown 85.9
1821 Female, age 72, unknown 78.6
2769 Male, age 72, unknown 78.3
2503 Female, age 72, unknown 77.4
2227 Male, age 72, unknown 77.1
2725 Female, age 75, unknown 73.5
1954 Female, age 42, unknown 72.8
1865 Male, age 51, unknown 68.6
1904 Male, age 53, unknown 66.4
2823 Male, age 76, right hemisphere 65.8
Substantia nigra
nTPM: 87.6
1916 Female, age 42, unknown 112.8
2665 Male, age 74, both hemispheres 108.3
1941 Male, age 53, unknown 100.9
1889 Female, age 72, unknown 91.7
1851 Male, age 51, unknown 91.3
2699 Male, age 18, unknown 88.6
2583 Male, age 75, right hemisphere 76.1
2590 Female, age 75, unknown 71.1
2409 Female, age 72, unknown 69.1
2241 Male, age 72, unknown 66.4
Superior colliculus
nTPM: 82.0
2668 Female, age 75, unknown 114.2
2664 Male, age 75, both hemispheres 91.3
1796 Male, age 53, unknown 90.7
2087 Female, age 72, unknown 86.2
2261 Male, age 18, unknown 83.5
1839 Male, age 51, unknown 75.1
2587 Male, age 74, left hemisphere 74.1
1895 Male, age 76, right hemisphere 71.9
1913 Female, age 42, unknown 68.5
1995 Male, age 72, unknown 64.8
Ventral tegmental area
nTPM: 80.9
1915 Female, age 42, unknown 95.3
2218 Male, age 76, both hemispheres 85.0
2410 Female, age 72, unknown 83.4
1942 Male, age 51, unknown 77.5
2223 Female, age 72, unknown 74.5
2021 Male, age 53, unknown 69.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 84.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 84.5
Samples: 139

Max nTPM: 207.4
Min nTPM: 36.4
Std nTPM: 24.9
Median nTPM: 82.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 207.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 138.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 137.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 135.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 134.3
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 132.7
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 132.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 131.8
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 128.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 125.8
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 125.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 56.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 56.7
FF:10158-103A5 76 years, female 56.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 91.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 84.3
Samples: 4

Max nTPM: 109.6
Min nTPM: 57.0
Sample A Female 109.6
Sample B Female 73.0
Sample C Male 97.7
Sample D Male 57.0
Midbrain
nTPM: 89.4
Samples: 4

Max nTPM: 105.1
Min nTPM: 62.6
Sample A Female 62.6
Sample B Female 91.0
Sample C Male 98.9
Sample D Male 105.1
Periaqueductal gray
nTPM: 78.8
Samples: 3

Max nTPM: 90.1
Min nTPM: 72.8
Sample B Female 73.5
Sample C Male 90.1
Sample D Male 72.8
Superior colliculi
nTPM: 91.4
Samples: 4

Max nTPM: 113.0
Min nTPM: 65.5
Sample A Female 113.0
Sample B Female 65.5
Sample C Male 93.5
Sample D Male 93.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 29.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 29.6
Samples: 4

Max nTPM: 32.3
Min nTPM: 25.6
Sample A Male 32.3
Sample B Male 30.0
Sample C Female 25.6
Sample D Female 30.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.0
70598359 Antisense, RP_050407_04_D04, Mouse strain C57BL/6J (56 days, male) 7.3
74988737 Antisense, RP_060315_04_B05, Mouse strain C57BL/6J (56 days, male) 6.7

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