MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:18.2 nTPM
HPA Brain:28.3 nTPM
GTEx:18.2 nTPM
FANTOM5:69.4 Scaled Tags Per Million
Pig:21.6 nTPM
Mouse:19.9 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 28.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 28.1
2219 Male, age 76, both hemispheres 32.1
2828 Female, age 72, unknown 32.0
1827 Male, age 72, unknown 30.7
1870 Female, age 42, unknown 29.2
1830 Male, age 51, unknown 29.0
2411 Female, age 72, unknown 28.3
1833 Male, age 53, unknown 27.7
2586 Male, age 75, left hemisphere 25.6
2666 Male, age 74, left hemisphere 24.3
2019 Male, age 18, unknown 21.8
Dorsal raphe nucleus
nTPM: 24.8
2750 Male, age 76, both hemispheres 27.4
1828 Male, age 53, unknown 25.6
2047 Male, age 72, unknown 25.4
2016 Female, age 72, unknown 25.3
2298 Female, age 72, unknown 20.4
Inferior colliculus
nTPM: 25.4
2849 Male, age 72, unknown 27.8
1848 Female, age 42, unknown 27.7
1890 Male, age 53, unknown 23.9
2097 Female, age 72, unknown 22.3
Median raphe nucleus
nTPM: 27.3
2220 Male, age 76, midline 27.3
Periaquaductal grey, anterior
nTPM: 27.1
1947 Male, age 18, unknown 32.1
1795 Male, age 51, unknown 27.9
2502 Female, age 75, unknown 21.2
Periaquaductal grey, dorsal
nTPM: 26.4
2850 Male, age 76, both hemispheres 29.6
2464 Female, age 72, unknown 26.3
1831 Male, age 72, unknown 25.5
1840 Male, age 53, unknown 24.4
Periaquaductal grey, lateral
nTPM: 28.3
2140 Male, age 76, both hemispheres 30.2
2053 Male, age 18, unknown 28.6
2272 Male, age 74, both hemispheres 26.0
Pretectal area
nTPM: 26.9
2667 Female, age 75, unknown 30.4
2825 Male, age 18, unknown 28.5
1815 Male, age 53, unknown 28.4
2407 Male, age 75, both hemispheres 28.3
1816 Male, age 51, unknown 28.0
2316 Male, age 76, right hemisphere 27.5
1944 Female, age 72, unknown 25.3
2007 Male, age 72, unknown 25.1
2224 Female, age 72, unknown 25.1
1817 Female, age 42, unknown 24.8
2273 Male, age 74, both hemispheres 24.3
Red nucleus
nTPM: 27.2
2588 Male, age 74, left hemisphere 29.8
1865 Male, age 51, unknown 29.5
2503 Female, age 72, unknown 28.9
2725 Female, age 75, unknown 28.1
2823 Male, age 76, right hemisphere 27.8
2769 Male, age 72, unknown 27.6
2584 Male, age 75, left hemisphere 27.3
1904 Male, age 53, unknown 26.3
1954 Female, age 42, unknown 25.9
2227 Male, age 72, unknown 25.9
1821 Female, age 72, unknown 25.1
2785 Male, age 18, unknown 24.3
Substantia nigra
nTPM: 26.6
2590 Female, age 75, unknown 33.7
2409 Female, age 72, unknown 29.9
2699 Male, age 18, unknown 27.1
2665 Male, age 74, both hemispheres 26.6
1941 Male, age 53, unknown 26.3
2583 Male, age 75, right hemisphere 25.1
1889 Female, age 72, unknown 25.0
1916 Female, age 42, unknown 24.7
1851 Male, age 51, unknown 24.5
2241 Male, age 72, unknown 23.6
Superior colliculus
nTPM: 27.9
1913 Female, age 42, unknown 31.5
2261 Male, age 18, unknown 30.0
1796 Male, age 53, unknown 29.2
1895 Male, age 76, right hemisphere 29.2
2087 Female, age 72, unknown 29.2
1995 Male, age 72, unknown 28.7
2587 Male, age 74, left hemisphere 26.5
1839 Male, age 51, unknown 26.0
2664 Male, age 75, both hemispheres 25.7
2668 Female, age 75, unknown 23.4
Ventral tegmental area
nTPM: 26.2
2021 Male, age 53, unknown 27.2
2410 Female, age 72, unknown 27.1
2218 Male, age 76, both hemispheres 26.9
2223 Female, age 72, unknown 26.7
1915 Female, age 42, unknown 24.7
1942 Male, age 51, unknown 24.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 18.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 18.2
Samples: 139

Max nTPM: 32.3
Min nTPM: 8.3
Std nTPM: 4.3
Median nTPM: 17.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 32.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 31.1
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 29.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 27.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 26.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 25.7
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 25.6
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 25.4
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 25.2
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 24.8
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 24.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 69.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 69.4
FF:10158-103A5 76 years, female 69.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 21.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 20.6
Samples: 4

Max nTPM: 25.2
Min nTPM: 17.3
Sample A Female 19.7
Sample B Female 17.3
Sample C Male 20.2
Sample D Male 25.2
Midbrain
nTPM: 21.6
Samples: 4

Max nTPM: 28.4
Min nTPM: 18.2
Sample A Female 28.4
Sample B Female 20.9
Sample C Male 18.2
Sample D Male 18.8
Periaqueductal gray
nTPM: 18.6
Samples: 3

Max nTPM: 19.4
Min nTPM: 17.2
Sample B Female 19.2
Sample C Male 19.4
Sample D Male 17.2
Superior colliculi
nTPM: 19.6
Samples: 4

Max nTPM: 20.6
Min nTPM: 17.3
Sample A Female 20.6
Sample B Female 17.3
Sample C Male 19.8
Sample D Male 20.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 19.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 19.9
Samples: 4

Max nTPM: 22.2
Min nTPM: 17.9
Sample A Male 18.6
Sample B Male 17.9
Sample C Female 20.7
Sample D Female 22.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
68161479 Antisense, RP_041122_01_E10, Mouse strain C57BL/6J (56 days, male) 0.7

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